Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14d07r
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    26   0.35 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   7.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.5  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   9.9  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   9.9  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 394 IVDITGEHLRDFLRRLRNYH 453
           ++ + G H+RDFL  L N H
Sbjct: 85  VLSVLGRHVRDFLNGLDNLH 104


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 459 FLILFQ*FITYFMIHYYDT 515
           F + +  F+T+F IHY  T
Sbjct: 470 FPVAYFMFLTFFFIHYKGT 488


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 459 FLILFQ*FITYFMIHYYDT 515
           F + +  F+T+F IHY  T
Sbjct: 456 FPVAYFMFLTFFFIHYKGT 474


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 459 FLILFQ*FITYFMIHYYDT 515
           F + +  F+T+F IHY  T
Sbjct: 490 FPVAYFMFLTFFFIHYKGT 508


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 459 FLILFQ*FITYFMIHYYDT 515
           F + +  F+T+F IHY  T
Sbjct: 439 FPVAYFMFLTFFFIHYKGT 457


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = +1

Query: 172 FTSYITHSQEFRNWNEFLVYN 234
           +++Y  ++  + N+N+ L YN
Sbjct: 91  YSNYNNYNNNYNNYNKKLYYN 111


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 68  IKFKIFKISNSNLIF 24
           I+FK F + N NL+F
Sbjct: 139 IRFKSFSLLNFNLLF 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,467
Number of Sequences: 438
Number of extensions: 4439
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)