Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14d04f
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 27 2.9
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 6.7
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo... 25 6.7
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 6.7
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M... 25 6.7
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 6.7
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar... 25 8.9
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 25 8.9
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 25 8.9
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 26.6 bits (56), Expect = 2.9
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = -2
Query: 318 VTSLTTTLLAPSRAKWATVPDALKMSEIGKV*SPSAFSM*IGSSPRS-WIPEVMRSMTFT 142
V ++TTTL + S+A TVP + +S +V P+ ++ S I + + + T
Sbjct: 290 VGTVTTTLQSGSQAFTTTVPASGSVSGTVEVVQPTGGTVTNTVYEGSQTITSTLATASGT 349
Query: 141 INCSTKFCLSLSRSTFEGT-AATLAARVTSTNAKTFIV 31
+ + + L + + GT A T+ V+ST A T +V
Sbjct: 350 VPGTVEVILPGPSTIYSGTVATTITYDVSSTPASTVVV 387
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 159 RSMTFTINCSTKFCLSLSRSTFEGTAATLAARVTSTNAKTFIVDFLL 19
R+ TFT + S+S+ T TL A TF+V F+L
Sbjct: 129 RNKTFTAPQKPGYFESISQITSSPRLNTLIANTAEGQVLTFVVTFIL 175
>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 360
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -1
Query: 235 WESVIAFGFFDVDWVESTLLDTGSDAIDDV--HNQLLDQILSFSLKVNF*GHSSDA 74
W S+I+F FF V + L S + D N L + F++ G++S +
Sbjct: 2 WSSIISFLFFSVALCQPLLFQKRSSNVSDFISFNASLPNVTIFAMGGTIAGYASSS 57
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 209 KAEGDYTFPISDIFSASGTVAHLALEGASNVVVND 313
+ E D T +SDI A+ V EGA +V++
Sbjct: 263 RGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSE 297
>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 360
Score = 25.4 bits (53), Expect = 6.7
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -1
Query: 235 WESVIAFGFFDVDWVESTLLDTGSDAIDDV--HNQLLDQILSFSLKVNF*GHSSDA 74
W S+I+F FF V + L S I D N L + F++ G++S +
Sbjct: 2 WRSIISFLFFSVALCQPFLFQKRSSNISDFISFNASLPNVTIFAMGGTIAGYASSS 57
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 151 HRSHHFRYPRAWTRPNLHRKSRRRL 225
H+ ++++ PRA R + H RRRL
Sbjct: 541 HKQYYWKKPRARPRSSGHSSRRRRL 565
>SPBC25H2.08c |mrs2||magnesium ion transporter
Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/49 (22%), Positives = 28/49 (57%)
Frame = +2
Query: 416 RELAVASSGSLVVEDLRLVSTVSIRLLPSISIRELSAVLTVGNVESALK 562
+++ + L+ DLR ++T ++P I +RE S ++ + ++ + +K
Sbjct: 99 KKMDLCKQNGLLPRDLRKLNTSINSIVPVILVREGSILINLLHIRALIK 147
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 25.0 bits (52), Expect = 8.9
Identities = 17/62 (27%), Positives = 24/62 (38%)
Frame = +2
Query: 428 VASSGSLVVEDLRLVSTVSIRLLPSISIRELSAVLTVGNVESALKVVLFGEDVSERLNDA 607
VA +L T I+ + S E+ +V KV+ FGED + D
Sbjct: 140 VAQEDALPFSQFVKSQTFEIQKIGEASYSEVYQASNADDVPVVWKVIPFGEDGQAQYADV 199
Query: 608 LN 613
LN
Sbjct: 200 LN 201
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 109 ERKTEFGRAIDCERHRSHHFRYPRAWTRPNLHRKSRRRLH 228
+RK R+ D E HR RY R+ R + + + R H
Sbjct: 335 DRKRSSSRSDDREYHRRSDGRYDRSNYRDDYRHRRKERDH 374
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,087
Number of Sequences: 5004
Number of extensions: 42051
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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