Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14c21f
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    27   1.6  
SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces p...    25   6.5  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    25   6.5  

>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 535 ETQPLDRRYAWEIIGKNSIRCWMDG 609
           + +PLD +Y+W++I   S   W+DG
Sbjct: 351 DVEPLDHKYSWDLI---SEMYWLDG 372


>SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 71

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 412 DDDVGDPELNLPIELALKNDGVYA 483
           D+D+GD + ++ ++  LK  GV A
Sbjct: 47  DEDIGDDDFSVQLQAELKKKGVAA 70


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = +1

Query: 370 QKFVDVKNENDDTKDDDVGDPELNLPIELALKN 468
           +K   +K  ND++K D+  + ++N+P  ++++N
Sbjct: 47  RKIKRLKYNNDNSKIDNFSNEQMNIPEFISVRN 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,646
Number of Sequences: 5004
Number of extensions: 43417
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)