Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14c21f
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0970 + 9776851-9778610,9779519-9779643,9779698-9779768,978...    34   0.10 
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498...    29   3.8  
11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368           28   5.0  
10_08_0211 + 15899017-15901392                                         27   8.8  
02_04_0636 - 24648288-24648740,24648902-24649049,24650165-24650703     27   8.8  

>12_01_0970 +
           9776851-9778610,9779519-9779643,9779698-9779768,
           9780158-9780586
          Length = 794

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = -2

Query: 603 HPA-SYAVLADNL-PGVSP-VQRLSLPFAYKRSVFCSDSNISARVHSIVFQ 460
           HPA S  +LA  L P + P    LSL FA K S  CSD++ + ++H++V +
Sbjct: 89  HPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAHTTVQLHALVLR 139


>03_05_0642 -
           26346260-26346367,26347902-26348162,26348542-26349849,
           26349960-26350178,26350241-26350300,26352159-26352215,
           26352945-26353029,26353486-26353843,26353931-26355170
          Length = 1231

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 394 ENDDTKDDDVGDPELNLPIELALKNDG 474
           + D+ +D+D  D +  L IE AL++DG
Sbjct: 179 QGDENQDEDENDADFELEIEEALESDG 205


>11_01_0398 - 3008074-3008428,3009775-3009926,3010070-3011368
          Length = 601

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 406 TKDDDVGDPELNLPIELALKNDGVYARANIAVGTKYGPFIGKWETQPL 549
           TK    G P+L +P+ ++LK       A+ +   KY PF   + + PL
Sbjct: 299 TKAQSRGSPQLGVPLHVSLKTCSHPQNASSSGQKKYTPFEECYPSPPL 346


>10_08_0211 + 15899017-15901392
          Length = 791

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 397 NDDTKDDDVGDPELNLPIELALKNDGV 477
           ND+TKDDD     +NL     +K D V
Sbjct: 764 NDETKDDDEKKMSVNLSSRTPIKRDSV 790


>02_04_0636 - 24648288-24648740,24648902-24649049,24650165-24650703
          Length = 379

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 229 CGLGWARTPM*QSQSGSAVGCQTPGYLLH 143
           C  GW RT      + S  G + PG+ LH
Sbjct: 298 CARGWGRTEQVPVVASSGNGVRLPGFALH 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,209,990
Number of Sequences: 37544
Number of extensions: 288229
Number of successful extensions: 816
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)