Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14c21f
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.3  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   4.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   4.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   4.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 253 GADMKDYYATLDFGLPETYLSN 318
           GA+++    T+DFG P T+  N
Sbjct: 309 GAEIEPSTQTIDFGRPATFTCN 330


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 302 KHTCPISPTTPGPTCRGLS 358
           K TC  SP+ P  T  GLS
Sbjct: 328 KETCRCSPSNPSITRTGLS 346


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 539 LSRWTGDTPGRLSARTAYDAGWT 607
           +S W GD    +S++  +  GWT
Sbjct: 120 ISGWHGDNMLEVSSKMPWFKGWT 142


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 539 LSRWTGDTPGRLSARTAYDAGWT 607
           +S W GD    +S++  +  GWT
Sbjct: 136 ISGWHGDNMLEVSSKMPWFKGWT 158


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 539 LSRWTGDTPGRLSARTAYDAGWT 607
           +S W GD    +S++  +  GWT
Sbjct: 193 ISGWHGDNMLEVSSKMPWFKGWT 215


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 388 KNENDDTKDDDVGDPELNLPI 450
           K++N+D     V + +LNLPI
Sbjct: 103 KSDNEDITYPTVLEVQLNLPI 123


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 388 KNENDDTKDDDVGDPELNLPI 450
           K++N+D     V + +LNLPI
Sbjct: 141 KSDNEDITYPTVLEVQLNLPI 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,215
Number of Sequences: 438
Number of extensions: 2948
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)