Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14c20r
         (636 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   5.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 416 LSFDTISISMYPNIQHPTRCSNPLS 342
           L F + S+S  P+++H  +C+   S
Sbjct: 150 LVFSSGSVSCVPSVKHVAKCATDFS 174


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 506 NIPSAYIHSIHSI 544
           NI +  IHSIHSI
Sbjct: 103 NITTTTIHSIHSI 115


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 547 PYPDIVYTKSLQTLRIHFRLPLKI 618
           PYPDIV+  +L+   + + + L I
Sbjct: 222 PYPDIVFNITLRRKTLFYTVNLII 245


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 269 NIAQISYIHIIKAFCVRCIFDVYSRLV 189
           ++ +ISY+  I  + V C   V++ L+
Sbjct: 294 SLPRISYVKAIDIYLVMCFVFVFAALL 320


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +1

Query: 523 HTFDPFHLPYPDIVY 567
           H   P+H P PD ++
Sbjct: 324 HIKSPYHTPEPDCIH 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,219
Number of Sequences: 438
Number of extensions: 4665
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)