Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14c13f
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...   105   7e-24
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    29   0.53 
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   1.6  
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.5  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   8.7  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score =  105 bits (251), Expect = 7e-24
 Identities = 56/174 (32%), Positives = 92/174 (52%), Gaps = 1/174 (0%)
 Frame = +2

Query: 92  MASIPLMYAQEDCELGGKESVEDDFAYRNNVMNAEREIRLAFIRKVYGLLTVQLLATVSI 271
           +A  P  Y++ + E   +    D F     V    + IR+AF+RKVY +LT QL  T   
Sbjct: 18  LAQAPPAYSEYN-ESATENPAVDQFKNTTPVAECAKSIRMAFLRKVYAILTAQLFVTSLF 76

Query: 272 AAVFMFVEPVQTF-IHTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYT 448
             +F ++ P  +F +  + W +I+ F +S+  L  LI+K    P N   L  FT ++  T
Sbjct: 77  GGIF-YLHPAFSFWVQMHPWFLILNFFISLVVLFGLIMKPYSYPRNYIFLFLFTALEGLT 135

Query: 449 IGVVVSYYNTMVVLQALALTFAVVFSLTLYTLNSKRDFSFIGYMLVAGLTVLIL 610
           +G  +++++  ++L+A+ +T  V  +LT +T  SK DFS +G  L   L  LIL
Sbjct: 136 LGTAITFFSARIILEAVFITLGVFVALTAFTFQSKWDFSRLGGFLYVSLWSLIL 189


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 190  IHYIVAVCKVILNRFLPS*FTVFLGVH*RYRSHFHKFRWVF 68
            + Y+V +   +LN+F    FT  +GV   YRS  H+ R  F
Sbjct: 1510 VEYLVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELRRAF 1550


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = +2

Query: 386 RRDSPANLYLLAAFTVIQAYTIGVVVSYYNT 478
           ++D   +L++LAA+  ++ + + +V+ Y+NT
Sbjct: 208 QKDFHFDLHILAAYLGVEGHPLDLVIDYHNT 238


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 84  NFVGFSTIYHVYYCRTFPI 28
           NF  +ST Y ++Y R FP+
Sbjct: 238 NFDDYSTSYELFYDRNFPL 256


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 269 IAAVFMFVEPVQTFIHTNNWMMII 340
           I   F+  + + TF H NNW+ I+
Sbjct: 298 IRLYFVTPDDIYTFDHCNNWIAIV 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,957
Number of Sequences: 5004
Number of extensions: 56445
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)