Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14c13f
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873... 93 2e-19
07_01_0554 - 4121692-4121895,4121991-4122148,4123241-4123354,412... 92 4e-19
03_05_1105 + 30438140-30438350,30438448-30438926 92 4e-19
03_06_0293 - 32889813-32890019,32890144-32890301,32891310-328914... 83 2e-16
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450... 81 9e-16
07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155 50 1e-06
11_06_0192 + 21128298-21128829,21129341-21129407,21131169-211312... 44 1e-04
11_08_0094 - 28314681-28314747,28315264-28315353,28315589-283157... 29 2.9
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 29 2.9
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 28 6.7
>03_06_0292 -
32886148-32886354,32886997-32887154,32887265-32887378,
32887660-32887924
Length = 247
Score = 92.7 bits (220), Expect = 2e-19
Identities = 53/144 (36%), Positives = 83/144 (57%), Gaps = 7/144 (4%)
Frame = +2
Query: 200 EIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFIHTNNWMMIIAFIL----SMGTL 367
++R AFIRKVY +++VQLL TV++A VEP++TF +++A+++ + +
Sbjct: 31 QLRWAFIRKVYVIVSVQLLVTVAVAGAVNLVEPIKTFFQARTPEVLVAYVIIIISPLIMM 90
Query: 368 IALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYTL- 544
+ +I R P NL+ L FTV ++++G+ N V+ QA +T A+V LT YT
Sbjct: 91 LPMIYFRNKHPINLFFLLLFTVCISFSVGLGCLSKNGTVIFQAAGMTAAIVIGLTCYTFW 150
Query: 545 NSKR--DFSFIGYMLVAGLTVLIL 610
+KR DF F+G L A VL L
Sbjct: 151 AAKRGYDFEFLGPFLFAATLVLFL 174
>07_01_0554 -
4121692-4121895,4121991-4122148,4123241-4123354,
4123824-4124082
Length = 244
Score = 91.9 bits (218), Expect = 4e-19
Identities = 56/148 (37%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Frame = +2
Query: 185 MNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFI---HTNNWMMIIAFILS 355
M E+R A IRK+Y +L++QLL T ++AAV + V + F H + I IL
Sbjct: 25 MTEPPEMRWALIRKIYVILSMQLLLTAAVAAVVVKVRAISHFFVSSHAGLGLYIFLIILP 84
Query: 356 MGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTL 535
L L + P NL LL FTV ++ +G+ ++ + V+L++ LT VVFSLT
Sbjct: 85 FIVLCPLYYYHQKHPVNLILLGLFTVAISFAVGMTCAFTSGKVILESAILTTVVVFSLTA 144
Query: 536 YTL---NSKRDFSFIGYMLVAGLTVLIL 610
YT RDFSF+G L A L VL++
Sbjct: 145 YTFWAAKRGRDFSFLGPFLFASLIVLLV 172
>03_05_1105 + 30438140-30438350,30438448-30438926
Length = 229
Score = 91.9 bits (218), Expect = 4e-19
Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 6/143 (4%)
Frame = +2
Query: 200 EIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFIHTNN---WMMIIAFILSMGTLI 370
++R AF+RKVY +L++Q+L T+++A+V +FV PV F + + I IL L
Sbjct: 14 QLRWAFVRKVYAILSIQMLLTIAVASVVVFVRPVALFFVSTPAGFALYIFLIILPFIVLC 73
Query: 371 ALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYTLNS 550
L + P NL LLA FT ++ +G+ ++ V+L++ LT AVV SLT YT +
Sbjct: 74 PLYYYYQRHPVNLLLLALFTAAISFAVGLTCAFTKGEVILESAILTAAVVVSLTAYTFWA 133
Query: 551 KR---DFSFIGYMLVAGLTVLIL 610
R DFSF+G L A + +L++
Sbjct: 134 ARRGHDFSFLGPFLFAAVMILMV 156
>03_06_0293 -
32889813-32890019,32890144-32890301,32891310-32891423,
32891531-32891777
Length = 241
Score = 83.0 bits (196), Expect = 2e-16
Identities = 51/143 (35%), Positives = 83/143 (58%), Gaps = 6/143 (4%)
Frame = +2
Query: 200 EIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPV-QTFIHTNNWMMIIAFILSMGTLIAL 376
++R A I K+Y +L+VQL T ++AA + V V + F+ +N + F+L + ++
Sbjct: 26 DLRWALIHKIYVILSVQLAMTAAVAAFVVKVRGVSEFFVSSNAGFALYIFLLFLPLIVLC 85
Query: 377 IVK--RRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYTL-N 547
++ + P NL LL FTV ++ +G+ +Y + V+ +A ALT VV SLT YT
Sbjct: 86 PLRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYTSGKVIFEAAALTAVVVISLTAYTFWA 145
Query: 548 SKR--DFSFIGYMLVAGLTVLIL 610
+KR DF+F+G L + + VLIL
Sbjct: 146 AKRGHDFNFLGPFLFSAVMVLIL 168
>05_04_0254 -
19444409-19444621,19444724-19444887,19444974-19445087,
19446086-19446395
Length = 266
Score = 80.6 bits (190), Expect = 9e-16
Identities = 43/146 (29%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Frame = +2
Query: 182 VMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTFIHTNNWMMIIAFILSMG 361
+ E +R F+RKVYG+L QLL T +++A+ + + + ++ + ++ +L
Sbjct: 44 ISRGESALRWGFVRKVYGILAAQLLLTTAVSALTVLHPTLNATLSSSPTLALVLAVLPFV 103
Query: 362 TLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYT 541
++ L + P N L FT+ +++IGV + +VL+AL LT AVV SLT YT
Sbjct: 104 LMVPLYHYQHKHPHNFVYLGLFTLCLSFSIGVACANTQGKIVLEALILTSAVVASLTAYT 163
Query: 542 L---NSKRDFSFIGYMLVAGLTVLIL 610
++F ++G +L + L +L++
Sbjct: 164 FWASKKGKEFGYLGPILFSALVLLVV 189
>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
Length = 220
Score = 50.0 bits (114), Expect = 1e-06
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Frame = +2
Query: 254 LATVSIAAVFMFVEPVQTFIHTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTV 433
+ +A +M P + I+A L + IA V + +L
Sbjct: 26 VGVAGVACTYMIERPELRWAFIRKVYAIVATQLVVTVAIAAAVYSVPAIRRFFLARTPAS 85
Query: 434 IQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYTL-NSKR--DFSFIGYMLVAGLTVL 604
+ A+ + +V + +++A +LTF +VF LTLYT +KR DFSF+ LVA VL
Sbjct: 86 LAAFVLVIVAPLIAGIAIIEAASLTFGLVFGLTLYTFWAAKRGHDFSFLRPFLVAAFLVL 145
Query: 605 IL 610
+L
Sbjct: 146 VL 147
>11_06_0192 +
21128298-21128829,21129341-21129407,21131169-21131211,
21131301-21131367,21131613-21131770,21131863-21132057
Length = 353
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +2
Query: 137 GGKESVEDDFAYRNNVMNAEREIRL--AFIRKVYGLLTVQLLATVSIAAVFMFVEPVQTF 310
G KE V + R V E + RL AF+RKVY +L +Q T +IA V V P+ F
Sbjct: 55 GEKEVVAEKAPARRKVAAEEEDPRLRWAFVRKVYCILALQFAVTAAIAVVAWAVRPIPRF 114
Query: 311 IHTN---NWMMIIAFIL 352
+W++ +A +L
Sbjct: 115 FAAGSLASWLVYLAILL 131
>11_08_0094 -
28314681-28314747,28315264-28315353,28315589-28315725,
28317020-28317589
Length = 287
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 101 IPLMYAQEDCELGGKESVED-DFAYRNNVMNAEREIRLAFIRKV 229
+PL Y +DC++ G + ++D D A N + E + RL + +V
Sbjct: 191 LPLFYFGDDCDMWGGDMLKDTDIALAPNFPSDEGQKRLEHLHRV 234
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 364 SDCIDRETTRFTRQSVSPGCIYCYPSVHHRRCRVILQ 474
SD + ++FT P CY +HH +C V LQ
Sbjct: 169 SDSLLYSVSQFTLLGTDPYHKLCYKELHHPKCDVCLQ 205
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -1
Query: 343 SNDHHPIIGVYKC--LYGLNKHKYSRNGDRSQELHCQETVD 227
S+ +HP++ + +Y +NK K +R+ L CQE+ D
Sbjct: 686 SSQNHPMLSYVELRNVYRINKGKLTRDNSGPGNLTCQESFD 726
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,020,301
Number of Sequences: 37544
Number of extensions: 368940
Number of successful extensions: 947
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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