Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14c13f
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   7.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.4  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 502 FNIRRRIFSHTVHA*LQTGLLI--HWI 576
           FN+RRR+  H  H  + + L++   WI
Sbjct: 207 FNLRRRLGYHLFHTYIPSALIVVMSWI 233


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 64  NLSRILL*DFPNLRV 20
           NLSR +L D PNL++
Sbjct: 492 NLSRGMLWDLPNLQI 506


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = -2

Query: 489 NTTMVL*YDTTTPMVYAWITVNAARRYRLAGES 391
           N   +L + +    V +W+  +  R Y L  E+
Sbjct: 258 NNDRILYFHSLASRVESWVNTSVIRNYTLFNEN 290


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 495 LWL*HSPSY 521
           LWL HSP+Y
Sbjct: 660 LWLNHSPNY 668


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 595 QTSYEHVSNE*EVPFGVKRVQCERK 521
           QTS +  S E  +P G    +C+R+
Sbjct: 536 QTSVQRASTEFGIPTGTLYGRCKRE 560


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,272
Number of Sequences: 438
Number of extensions: 3604
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)