Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14c09r
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 231 6e-62
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 190 1e-49
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 34 0.020
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 0.74
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|... 27 2.3
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy... 26 6.9
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 6.9
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 9.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 9.1
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 9.1
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 231 bits (566), Expect = 6e-62
Identities = 105/189 (55%), Positives = 140/189 (74%), Gaps = 1/189 (0%)
Frame = -3
Query: 773 DMAYQGFATGDVDNDAFAVRLFVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAA 594
DMAYQGFA+GD DA+A RLF ++L QSFAKNMGLYGERAG + L D AA
Sbjct: 248 DMAYQGFASGDFARDAYATRLFASSNVPMLLCQSFAKNMGLYGERAGCFSILANDAEEAA 307
Query: 593 KVMSQVKIMVRVMYSNPPLYGARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGI 414
++ SQ KI++R +YSNPP+ GAR+ IL+N L++QW G+V M++R+ +MR LR +
Sbjct: 308 RIESQTKILIRALYSNPPVNGARIANHILSNPALREQWAGEVVGMSERLKSMRKALRNIL 367
Query: 413 E-GAGNPHPWQHITDQIGMFCFTGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYI 237
E N H W+HITDQIGMFC+TGL P+QV+ L K++H+YLTK+GRIS++G+++ NV Y
Sbjct: 368 EKDLKNKHSWKHITDQIGMFCYTGLNPQQVDVLAKQYHIYLTKNGRISISGLNTSNVRYF 427
Query: 236 AEAIHKVTS 210
AEAI+ VTS
Sbjct: 428 AEAINAVTS 436
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 190 bits (464), Expect = 1e-49
Identities = 88/184 (47%), Positives = 125/184 (67%)
Frame = -3
Query: 773 DMAYQGFATGDVDNDAFAVRLFVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAA 594
D+AYQGFA+GD++ D++A+ FVK + QSFAKNMGLYGER G + ++ D +T
Sbjct: 219 DIAYQGFASGDLNRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVAKDASTKN 278
Query: 593 KVMSQVKIMVRVMYSNPPLYGARLVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGI 414
KV+SQ+ I+ R SNPP YGAR+ EIL + +L +W D+K M+ RII MR +LR +
Sbjct: 279 KVLSQLCIVQRNTISNPPAYGARIAAEILNSPQLFAEWEQDLKTMSSRIIEMRKRLRDSL 338
Query: 413 EGAGNPHPWQHITDQIGMFCFTGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIA 234
P W HIT QIGMF FTGL P QV+ + +H+Y + +GRIS+AG+++ NV ++A
Sbjct: 339 VALKTPGSWDHITQQIGMFSFTGLTPAQVQFCQERYHLYFSANGRISMAGLNNSNVEHVA 398
Query: 233 EAIH 222
+A +
Sbjct: 399 QAFN 402
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.020
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = -2
Query: 528 PPRAGDTHQRRTQ-KAMARRRKADGGPDHHDAEPAPRRHRGRRQPAPLATHHRPDRHVLL 352
P + D+HQ R+ ++ R R + H + + R+ + P ++ H R
Sbjct: 133 PHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRRRYE 192
Query: 351 HRTQARAGRASDERVPRVPDERRTHFRRRHLLAKRE 244
R+ +R+ RA D + D+ R+H R+R RE
Sbjct: 193 ERS-SRSSRAHDYDYEDLRDDDRSHERKRSRSRPRE 227
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -2
Query: 453 PDHHDAEPAPRRHRGRRQPAP-LATHHRPDRHVLLHRTQARAGRASDERVP 304
P HH +PR G R P+P + R + R + R+ R+S R P
Sbjct: 113 PRHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHP 163
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 29.1 bits (62), Expect = 0.74
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = -3
Query: 707 VKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQVKIMVRVMYSNPPL--- 537
+KEG + ++F N+ FL D A+ ++ R P L
Sbjct: 330 LKEGLNSTVKKTFFDNLNSEKVCPSVSPFLTPDNI-ASSILYSTASFSRSKPDRPRLNLS 388
Query: 536 YGARLVQEILTNAELKKQWLGDVKQMAD 453
+L+Q L +LKKQ+ GD++ +AD
Sbjct: 389 LELKLMQNELNKGQLKKQFKGDLRNLAD 416
>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 633 ARALSVQTHVLSETLRQHDLVSFLDEETD 719
ARA S+ T +L HD+ FL+ TD
Sbjct: 295 ARATSMDTTILGNFTENHDVPRFLNRSTD 323
>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -3
Query: 290 KDGRISVAGISSQNVNYIAEAI 225
K+GRI+ G+S+ N++++ E I
Sbjct: 130 KEGRINKIGVSNYNIHHLEEII 151
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 143 EHSIYLKQ*LIKNPNLLKVFVNLF 72
E ++L Q L K+PN K+F NL+
Sbjct: 524 ERVVFLLQELAKSPNTPKLFFNLY 547
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/62 (19%), Positives = 27/62 (43%)
Frame = -2
Query: 417 HRGRRQPAPLATHHRPDRHVLLHRTQARAGRASDERVPRVPDERRTHFRRRHLLAKRELH 238
++ P P + H P L+H+++++ + + R +R L +EL+
Sbjct: 1253 NKREHHPKPFSLHQVPPPESLIHKSKSKFSKGNHHSTNGTQSIRGRGGKRGKPLRSKELN 1312
Query: 237 RR 232
R+
Sbjct: 1313 RK 1314
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 9.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 456 GPDHHDAEPAPRRHRGRRQPAP 391
G H P+PR R RR P+P
Sbjct: 342 GSLHRSRSPSPRSGRPRRSPSP 363
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = -3
Query: 737 DNDAFAVRLFVKEGHQVMLAQSFAKNMGLYGERAGALTFLCGDEATAAKVMSQ 579
DND FA ++ + E ++ + N G+ ++ LTF + +++S+
Sbjct: 826 DNDGFASKINLFEAQMLVQFAVYLINNGVEPQKITCLTFYAAQKDLIERLLSE 878
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,092
Number of Sequences: 5004
Number of extensions: 51301
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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