Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14c09f
(584 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom... 143 2e-35
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 107 1e-24
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.0
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 26 4.7
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 26 4.7
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 25 8.1
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 8.1
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 8.1
>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 437
Score = 143 bits (346), Expect = 2e-35
Identities = 71/136 (52%), Positives = 92/136 (67%)
Frame = +2
Query: 152 WNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGL 331
W +V MGPPD I GITEAYKKD KK+NLG G YRDD GKP+VLPSVR+AE L S+ L
Sbjct: 40 WADVPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLSQKL 99
Query: 332 NHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAKA 511
+ EYAPI+G ++ KLA+G+ IK+R + Q++SGTGAL + F+ Y +
Sbjct: 100 DKEYAPITGIPSFRVQATKLAYGDVYESIKDRL-VSAQSISGTGALCIAANFLASFY-PS 157
Query: 512 KEIWLPTPTWGNHPQI 559
K I++ PTWGNH +
Sbjct: 158 KTIYVSDPTWGNHKNV 173
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 107 bits (257), Expect = 1e-24
Identities = 52/134 (38%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
Frame = +2
Query: 158 NVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSR-GLN 334
N++ D I + Y +D PKKVN+ VGAYRDD GKP++LP+V+KA +I+ + N
Sbjct: 8 NIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFN 67
Query: 335 HEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAK-- 508
HEY PI+G +T A A++ F + ++ ++Q++SGTGA L FI Y K
Sbjct: 68 HEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHT 127
Query: 509 AKEIWLPTPTWGNH 550
+++ PTW H
Sbjct: 128 GAHVYISNPTWPVH 141
>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 159
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 331 ESSTVKNFFCLSDRRQNKWFSLIVSICSNP 242
ESST ++ L+ NKWF + +NP
Sbjct: 113 ESSTKTVYYVLAHLNDNKWFGVATQKTNNP 142
>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
3|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 310 FFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVC 203
F C+ D R N +LI S CS FF +LLVC
Sbjct: 224 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 257
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 4.7
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 310 FFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVC 203
F C+ D R N +LI S CS FF +LLVC
Sbjct: 214 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 247
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 495 FVMNSSPSRSAPVPDNVCTVQLLLFLMTGL 406
F NSSP+RS P + ++LLL T +
Sbjct: 208 FHRNSSPNRSLPRSRKIDLLKLLLIFSTSI 237
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Frame = -2
Query: 211 LVCF----CNA*DYIWR--THLNIVPPGAAGSKACTTNDRVYI 101
LVCF N D W + +N PP AG A T +D++YI
Sbjct: 215 LVCFDLNNLNTSDSRWELASVVNDPPPARAGHVAFTFSDKLYI 257
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/67 (20%), Positives = 32/67 (47%)
Frame = +2
Query: 50 KMAQVLKKLTTQVLKPNNVDTIVGCTGLRASSTWWNNVQMGPPDVILGITEAYKKDTHPK 229
+++ L + KP + D +G ++ S W++ MG ++ + T K +T +
Sbjct: 325 RLSIFLPSALNNISKPESTDRPNTASGNQSVSAWFSLEPMGQINLTMNFT---KHNTRKR 381
Query: 230 KVNLGVG 250
++ G+G
Sbjct: 382 PMDAGLG 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,179
Number of Sequences: 5004
Number of extensions: 52937
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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