Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14c06f
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37430-5|AAB52674.2|  389|Caenorhabditis elegans Set (trithorax/...    34   0.097
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    32   0.39 
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    31   0.69 
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    31   0.91 
U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-li...    29   2.1  
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z93388-2|CAB07659.1|  369|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z74028-6|CAI91174.1|  674|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z74028-5|CAA98427.1|  677|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U37430-5|AAB52674.2|  389|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 12
           protein.
          Length = 389

 Score = 33.9 bits (74), Expect = 0.097
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +3

Query: 411 PKHPAGCYYPTRCRNTPGYFC*SARMGNYRSRRQCI*RQPPQARTHCDQQRNCREQYKGH 590
           PK   G    T C+   G  C +    N+ + R+C     P+  ++C+ QR  + Q+ G 
Sbjct: 45  PKRKTGLLTVTSCKC--GTDCTTEECSNFANHREC-----PRGCSNCENQRFRKRQFCGV 97

Query: 591 DRVVTDNKFCAGL 629
           +  +TDN    GL
Sbjct: 98  ETFLTDNGIGHGL 110


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 372 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 473
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 396 CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 527
           C P+RPK P G   P  CR  PG      R G  NY +   ++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +3

Query: 372  CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 467
            CE   +  NT C P+  K P  C+   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +2

Query: 149 YSYPS*INGSNSALVLFSPTTTTFQLL 229
           YSYPS I   +S +V+ + TTTTF LL
Sbjct: 75  YSYPSPIVLEHSFVVMTTTTTTTFSLL 101


>U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical
           protein F31D5.4 protein.
          Length = 989

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
 Frame = +2

Query: 152 SYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVAL-SLDLPVAVSPVKYLMFTL 328
           S PS    S++     +  TTT  ++P +   +TI  T  + S+     V+       T+
Sbjct: 220 STPSSTEASSTVTSTTTARTTT-TMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTV 278

Query: 329 LLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRVLLSNKVS 451
           + T+P +    T+   AS     PSTS  T++    +N  S
Sbjct: 279 VTTVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATS 319


>AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-like
           protein MTH-2 protein.
          Length = 971

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
 Frame = +2

Query: 152 SYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVAL-SLDLPVAVSPVKYLMFTL 328
           S PS    S++     +  TTT  ++P +   +TI  T  + S+     V+       T+
Sbjct: 202 STPSSTEASSTVTSTTTARTTT-TMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTV 260

Query: 329 LLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRVLLSNKVS 451
           + T+P +    T+   AS     PSTS  T++    +N  S
Sbjct: 261 VTTVPTTTATSTSTSTASTTTTTPSTSTHTTTVTYSTNATS 301


>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
           protein K02B12.5 protein.
          Length = 1204

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 621 RRICYQSRRDHDPCTVPCSFFVGHNEFELVEVAVRYTAALNGSS 490
           RR C  + +D+   T P S  V HN++  V V +RY A +N  S
Sbjct: 540 RRGCKVNAKDNGGWT-PLSEAVAHNQYGNVLVLLRYGAEVNARS 582


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein
            T20F7.5 protein.
          Length = 1065

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -1

Query: 240  METGSS*KVVVVGENNTSALLEPLIQDG*EYFNLDQAGMLANRHRSTEIASSAAADGSEH 61
            +E  SS  V    E+     +EP++++  +Y +LD   M + RHRS +I S    D   H
Sbjct: 907  LERKSSSTVPEKNEDELRVEIEPIMKELSDYESLD---MRSIRHRSDKIDSYFDLDSEFH 963

Query: 60   SY 55
             Y
Sbjct: 964  DY 965


>AF016668-7|AAB66091.3|  471|Caenorhabditis elegans Hypothetical
           protein F36H9.1 protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -1

Query: 615 ICYQSRRDHDPCTVPCSFFVGHNEFELVE-VAVRYTAALNGSSPSEQINKNTLGYY---D 448
           ICY S+RD    T  C     +  +E +  V  +  +++N  +P E+     LGYY   D
Sbjct: 399 ICYLSKRDQSERTKYCIGQKCYLFYEDINNVKEKGCSSVNDEAPEEEKRLGKLGYYTYCD 458

Query: 447 TLLDNSTLL 421
             L N  LL
Sbjct: 459 ENLCNGDLL 467


>Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical
           protein ZC482.6 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +1

Query: 169 QWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAVNHPEF 348
           ++F+Q    VLT   + S A CF   F    YR  +    R   P  +  +  +V HP  
Sbjct: 307 RFFEQAQSFVLTFQIFNSVAHCFICFFLSSQYRETVKTMIRIKTPPTVMVLESSV-HPTT 365

Query: 349 SEENYDKDVSI 381
            E +   ++ I
Sbjct: 366 RETSKTSNLVI 376


>Z93388-2|CAB07659.1|  369|Caenorhabditis elegans Hypothetical
           protein T10C6.2 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 579 TVPCSFFVGHNEFELVEVAVRYTAALNGSSPSEQINKNTLGYYDTLLDNSTLLD 418
           T+PCS F+G N +    V+ +       S P    NK  + +Y  L D +T ++
Sbjct: 167 TIPCSIFLGRNYYVNNVVSQK-------SYPISMENKTVVYFYPELFDGTTTIN 213


>Z74028-6|CAI91174.1|  674|Caenorhabditis elegans Hypothetical
           protein C14C10.3b protein.
          Length = 674

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 153 EYFNLDQAGMLANRHRSTEIASSAAADGSEHSY 55
           E F+LD  G+L+ + +S E  SSA   G+EH++
Sbjct: 57  EVFSLDDFGLLSMKSQSLESISSA---GNEHNF 86


>Z74028-5|CAA98427.1|  677|Caenorhabditis elegans Hypothetical
           protein C14C10.3a protein.
          Length = 677

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 153 EYFNLDQAGMLANRHRSTEIASSAAADGSEHSY 55
           E F+LD  G+L+ + +S E  SSA   G+EH++
Sbjct: 57  EVFSLDDFGLLSMKSQSLESISSA---GNEHNF 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,537,227
Number of Sequences: 27780
Number of extensions: 355519
Number of successful extensions: 988
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)