Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14c04f
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 30 0.24
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 28 0.95
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 28 0.95
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 28 0.95
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 28 0.95
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 28 0.95
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 28 0.95
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 28 0.95
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 28 0.95
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 28 0.95
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 28 0.95
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 28 0.95
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 27 1.7
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.9
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 5.1
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 6.7
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 8.9
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 8.9
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 30.3 bits (65), Expect = 0.24
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 220 KDVRLMAKWPHQLSLQHCLAGHLSQALQSPQP 125
+D +L+ +P QL + GH+S QSP P
Sbjct: 645 QDQKLLGTFPSQLVRLSLIVGHISDVFQSPDP 676
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 0.95
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 49 GYTSAYVPVETFYHENVGIPLAKSIRAAETAKL 147
GY + +V V+ F + +P KSI A +TA++
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 0.95
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 49 GYTSAYVPVETFYHENVGIPLAKSIRAAETAKL 147
GY + +V V+ F + +P KSI A +TA++
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 0.95
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 49 GYTSAYVPVETFYHENVGIPLAKSIRAAETAKL 147
GY + +V V+ F + +P KSI A +TA++
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 0.95
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 49 GYTSAYVPVETFYHENVGIPLAKSIRAAETAKL 147
GY + +V V+ F + +P KSI A +TA++
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 0.95
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 49 GYTSAYVPVETFYHENVGIPLAKSIRAAETAKL 147
GY + +V V+ F + +P KSI A +TA++
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 0.95
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 49 GYTSAYVPVETFYHENVGIPLAKSIRAAETAKL 147
GY + +V V+ F + +P KSI A +TA++
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 0.95
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 49 GYTSAYVPVETFYHENVGIPLAKSIRAAETAKL 147
GY + +V V+ F + +P KSI A +TA++
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 0.95
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 49 GYTSAYVPVETFYHENVGIPLAKSIRAAETAKL 147
GY + +V V+ F + +P KSI A +TA++
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 0.95
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 49 GYTSAYVPVETFYHENVGIPLAKSIRAAETAKL 147
GY + +V V+ F + +P KSI A +TA++
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 0.95
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 49 GYTSAYVPVETFYHENVGIPLAKSIRAAETAKL 147
GY + +V V+ F + +P KSI A +TA++
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 28.3 bits (60), Expect = 0.95
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 49 GYTSAYVPVETFYHENVGIPLAKSIRAAETAKL 147
GY + +V V+ F + +P KSI A +TA++
Sbjct: 1000 GYNALFVVVDRFSKMAILVPCTKSITAEQTARM 1032
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 412 QVFVHPQWNPTLLNNDVAMIYLPHRVTLNN 501
Q + P WN + N D+ +I +P V ++N
Sbjct: 205 QFSLQPWWNDMVSNKDIDLILIPAHVPVHN 234
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 259 GTSACGSS--LLSANRLVTAAHCWFDGRFQANQFVVVLGSNTL 381
G AC + LLS + L A W D F AN++ + SN++
Sbjct: 263 GWIACTTDTVLLSKSSLYDLALYWPDNSFNANKYPQIFNSNSI 305
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 439 PTLLNNDVAMIYLPHRVTLNNNIKPIAL 522
PT +N+DV+ + + +NN+ KP+A+
Sbjct: 1057 PTSVNHDVSHVGESTKPAVNNSTKPVAV 1084
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 426 MYKNLTSSDTNTTVEQRV*AENHNELVSLEAAIKPAVGGG 307
+YK++ S + + T + V +NHN L+ A+ VGGG
Sbjct: 171 VYKHMFSGNNHITKDLLVQQQNHNRQKPLQLAMF-MVGGG 209
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 25.0 bits (52), Expect = 8.9
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 386 WNSVFEPRTTTNWLAWKR 333
W+S+ +P NW WK+
Sbjct: 81 WDSIDDPLNPKNWPMWKK 98
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 508 KPIALPNTADLNNLFV-GQWGGRCWIW 585
+PIA+ ++ N F G WGG+ +W
Sbjct: 173 RPIAIVRFSNNGNHFASGSWGGQVKVW 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,194
Number of Sequences: 5004
Number of extensions: 53112
Number of successful extensions: 132
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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