Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14c04f
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0991 - 21500143-21500799,21500834-21501172                       29   4.0  
02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783     28   6.9  
10_08_0125 - 15000650-15001717                                         27   9.2  
04_03_0990 - 21481459-21481933,21482140-21482771                       27   9.2  

>04_03_0991 - 21500143-21500799,21500834-21501172
          Length = 331

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 196 ISPSNAHPYLAGLLITFINAVGTSACGSSLLSANRLVTAA 315
           + PS+ H +L GLL T   A  T        +A+RLV AA
Sbjct: 157 VPPSDLHRHLGGLLATGEGADVTFEVSGKTFAAHRLVLAA 196


>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
          Length = 1439

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 100 PHSRGRRSPPAHRLMCSPRRRYRRVQQFSFRQ 5
           P   G  SPP  R+M  P    R  + FSF Q
Sbjct: 489 PGEAGEESPPRSRIMAMPLMGKRMFEGFSFLQ 520


>10_08_0125 - 15000650-15001717
          Length = 355

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 196 ISPSNAHPYLAGLLITFINAVGTSACGSSLLSANRLVTAA 315
           + PSN H Y   LL++          G  + +A+RLV AA
Sbjct: 156 VPPSNMHLYFGDLLVSKEGTDVKFLVGGEMFAAHRLVLAA 195


>04_03_0990 - 21481459-21481933,21482140-21482771
          Length = 368

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +1

Query: 115 KSIRAAETAKLDSSVQPDNAARIVGGAISPSNAHPYLAGLLITFINAVGTSACGSSLLSA 294
           K +R  E   +D ++ P  +   V   + PS+ H +L GLL T   A  T        +A
Sbjct: 153 KDLRT-EDIDVDDAMPPPQSPPTV--VVPPSDLHRHLGGLLATGEGADVTFEVEGKTFAA 209

Query: 295 NRLVTAA 315
           +R V AA
Sbjct: 210 HRWVLAA 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,536,922
Number of Sequences: 37544
Number of extensions: 404643
Number of successful extensions: 1071
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)