Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14c04f
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    52   3e-07
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    51   8e-07
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    42   5e-04
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    39   0.003
Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF039039-4|AAB94177.2|  591|Caenorhabditis elegans Hypothetical ...    28   4.7  
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    27   8.2  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
 Frame = +1

Query: 178 RIVGGAISPSNAHPYLAGLLITFINAVGTSACGSSLLSANRLVTAAHCWFDGRFQANQFV 357
           R++GG+ S  ++ P+   LL    + +G   CG SL+  N ++TAAHC+   R   +  V
Sbjct: 57  RLIGGSESSPHSWPWTVQLL----SRLGHHRCGGSLIDPNFVLTAAHCFAKDRRPTSYSV 112

Query: 358 VVLGSNTLFHGGVRVTTRQVFVHPQWNPTLLNN-DVAMIYLPHRVTLNNNIKPIALPNTA 534
            V G  +      RVT   V +HP +N    ++ D A++ +   V  +   +PI LP+  
Sbjct: 113 RVGGHRSGSGSPHRVTA--VSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLP 170

Query: 535 DLNN--LFVGQWG 567
            + N    V  WG
Sbjct: 171 AVENRLCVVTGWG 183


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
 Frame = +1

Query: 175 ARIVGGAISPSNAHPYLAGLLITFINAVGTSACGSSLLSANRLVTAAHCWFDGRFQANQF 354
           AR+VGG  +   A P+ A L      A     CG+S+L    L+TAAHC F+   + + +
Sbjct: 25  ARVVGGFETVPGAFPWTAALRN---KATKAHHCGASILDKTHLITAAHC-FEEDERVSSY 80

Query: 355 VVVLG--SNTLFHGGVRV-TTRQVFVHPQWNPTLLNNDVAMIYLPH-RVTLNNNIKPIAL 522
            VV+G   N    G  ++   +++  +P +   + ++D+A++ +P+  +  N   +PI L
Sbjct: 81  EVVVGDWDNNQTDGNEQIFYLQRIHFYPLYK-DIFSHDIAILEIPYPGIEFNEYAQPICL 139

Query: 523 PN 528
           P+
Sbjct: 140 PS 141


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 34/125 (27%), Positives = 60/125 (48%)
 Frame = +1

Query: 148 DSSVQPDNAARIVGGAISPSNAHPYLAGLLITFINAVGTSACGSSLLSANRLVTAAHCWF 327
           + S +P  + RI+GG      A+ ++A L+    N  G   CG++++    LVTAAHC  
Sbjct: 27  EESYKPIFSFRIIGGNSIDDGAN-WMAKLVSYGDNGQGI-LCGATVIDDFWLVTAAHCAL 84

Query: 328 DGRFQANQFVVVLGSNTLFHGGVRVTTRQVFVHPQWNPTLLNNDVAMIYLPHRVTLNNNI 507
             + Q   FV V            V  ++ ++H  +N    +ND+A++ +   ++    I
Sbjct: 85  --QLQTRSFVYVREPKNNRERSFSV--KEAYIHSGYNNQTADNDIALLRISSDLS-KLGI 139

Query: 508 KPIAL 522
           KP+ L
Sbjct: 140 KPVCL 144


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 8/115 (6%)
 Frame = +1

Query: 223 LAGLLITFINAVGTSACGSSLLSANRLVTAAHCWFDGRFQANQFVVVLGS---NTLFHGG 393
           LA ++  F +   T+ CG  L++ + ++T+AHC F G   A    V LG    N    G 
Sbjct: 31  LASVITRFPDGT-TNVCGGVLIAPSIVITSAHCVFSGDDFAVTAKVTLGDVHLNKHDDGE 89

Query: 394 VRVTTRQVFVHPQW--NPTLLNNDVAMIYLPHRVTLNN---NIKPIALPNTADLN 543
               +  + +  ++  + +  N+DVA+I+LP R  + +   +++   LP+T  +N
Sbjct: 90  QEFRSHAMAISKKFFNDASEANDDVAVIFLPQRADVCHSPLSLQIAKLPSTGSVN 144


>Z81486-11|CAB03994.1| 1150|Caenorhabditis elegans Hypothetical
           protein C53A5.2 protein.
          Length = 1150

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 474 VNHCHIVVQKGGIPLRMYKNL 412
           VN+C  VVQKG I   +Y+NL
Sbjct: 602 VNNCKTVVQKGNIITNVYRNL 622


>Z78015-6|CAB01437.1| 1150|Caenorhabditis elegans Hypothetical
           protein C53A5.2 protein.
          Length = 1150

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 474 VNHCHIVVQKGGIPLRMYKNL 412
           VN+C  VVQKG I   +Y+NL
Sbjct: 602 VNNCKTVVQKGNIITNVYRNL 622


>AF039039-4|AAB94177.2|  591|Caenorhabditis elegans Hypothetical
           protein T08B1.1 protein.
          Length = 591

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +1

Query: 331 GRFQANQFVVVLGSNTLFHGGVRVTTRQVFVHPQWNPTLLNNDVAMIYLP-HRVTLN 498
           G +Q   F+V+L ++  + G            P WN TL NN   +I  P H  T N
Sbjct: 43  GPYQIFCFIVILYASIEWAGNSTFMHLLGSFEPDWNCTLANNQTVIITAPTHDDTCN 99


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +1

Query: 187 GGAISPSNAHPYLAGLLITFINAVGTSACGSSLLSANRLVTAAHCWFDGRFQANQ 351
           G   +P++  P+   + +          CG +L++   ++TAAHC F   F A +
Sbjct: 34  GNTGNPTHLAPWAVQIRVKARKGDFEVICGGTLITLKHVLTAAHC-FQKHFGAKK 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,783,201
Number of Sequences: 27780
Number of extensions: 311983
Number of successful extensions: 830
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)