Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14c04f
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    49   4e-08
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.2  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           22   4.2  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   5.6  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   9.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.8  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   9.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 48.8 bits (111), Expect = 4e-08
 Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 9/128 (7%)
 Frame = +1

Query: 169 NAARIVGGAISPSNAHPYLAGLLITFINAVGTSACGSSLLSANRLVTAAHCWFDGRFQAN 348
           N +RIVGG  +  N  P +AG+  T+   +    CG++++S   ++TAAHC  D      
Sbjct: 157 NPSRIVGGTNTGINEFPMMAGIKRTYEPGM---ICGATIISKRYVLTAAHCIIDE--NTT 211

Query: 349 QFVVVLG-----SNTLFHGGVRVTTRQVFVHPQWNPTLLN----NDVAMIYLPHRVTLNN 501
           +  +V+G     S T  +  V  +  +V +HP+++    +    ND+A++     +   +
Sbjct: 212 KLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGD 271

Query: 502 NIKPIALP 525
            + P  LP
Sbjct: 272 KVGPACLP 279


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 49  GYTSAYVPVETFYHENVGIPLAKS 120
           GY S   PV+  Y  NV   L K+
Sbjct: 619 GYASVVGPVKGIYQHNVASGLTKA 642


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 97  VGIPLAKSIRAAETAKLDSSVQPDNAARIV 186
           VG+   K+ +A   +  +  +QP  AA +V
Sbjct: 85  VGVHCMKTTQAVVVSLYEDPIQPQQAASVV 114


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 94  NVGIPLAKSIRAAETAKLDSSVQPD 168
           NV I  AKSIRA  T  + +SV  D
Sbjct: 245 NVLIERAKSIRARRTECVTNSVTCD 269


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 546 PICWPMGRSLLDMD 587
           P+  P G ++LDMD
Sbjct: 46  PVTPPQGENMLDMD 59


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 106 PLAKSIRAAETAKLDSSVQPDNAAR 180
           PL+   R AE  KLD++ Q ++A +
Sbjct: 713 PLSMLQRMAEFTKLDTNRQVNSAVK 737


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +3

Query: 171 CCKDSWWGHFAIKRTSLFGWSS 236
           CC   WW    +  T  F +SS
Sbjct: 200 CCTTXWWSXXTVAXT--FKYSS 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,524
Number of Sequences: 438
Number of extensions: 3946
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)