Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14c03f
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   3.0  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   4.0  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.0  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    26   5.3  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   7.0  
SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   7.0  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   9.3  
SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces p...    25   9.3  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +1

Query: 22  SRTDVLNRMCNMCTRDVTLEAPTPPKVSRTLERMKLKHNITTDPVNEEKQRE 177
           S   V+N   N+  + + L   T  K++RT+ ++K+   ++ +PV+    +E
Sbjct: 752 SSLKVVNLSSNILEK-IKLPVATSKKLTRTISQLKIMRTLSGNPVSSLSSQE 802


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 258 ETTRVEGIRY-SDTDIAAVPRXXXXXXXXXVDEPARLS**RPRLEGAVRGGRG 413
           ++ R++G  Y + +DI +  +            P RL    PR  G  RGGRG
Sbjct: 402 QSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPRTGGGSRGGRG 454


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 463 GRYRTQASSISELRGEWPRPPRTAPSSRG 377
           G   T  + IS L+ +   PP TAP S G
Sbjct: 52  GASNTSTNQISSLKVDVSSPPSTAPGSAG 80


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 91  PPKVSRTLERMKLKHNITTDPVNEEKQREVEYQPDLL 201
           PP  S ++ R    H+ T+   NE+   E +++PD++
Sbjct: 365 PP--SSSISRSSTIHSCTSSKRNEDSLSESDFEPDII 399


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +2

Query: 452 PVSSYTSPFRDTSSAACRPSCSLSTTRSTPA*ACWDSWRTSAHSALRNSRTPHGYS 619
           P SS TS  RD + +  +   S ST  ++      ++++T  H+AL +  + H Y+
Sbjct: 355 PASSTTSA-RDQTPSTPKDVGSPSTAETSAEEKQMETYKTPTHAALSDIISTHDYA 409


>SPCC830.09c |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -3

Query: 185 YSTSLCFSSLTGSVVILCFNFIRSKVRDTFGGVGASSVTSRVHILHILFNTS 30
           Y T    SS+T S +      IR+ V + FG VG   V S + + +   NTS
Sbjct: 24  YPTIPSDSSITTSSLS---KIIRTMVAENFGDVGIGKVASSLTVKYFSPNTS 72


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 623 ASCIHEVFSNSVRHCVRRYARSP 555
           +S ++E +SN   +C RRY   P
Sbjct: 412 SSLLYENYSNQCANCGRRYGNDP 434


>SPAC15A10.05c |mug182||YjeF family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 140 ILCFNFIRSKVRDTFGGVGASSVTSRVHILHI 45
           I  F+F +  VRD FG + A+ V S++ +L +
Sbjct: 130 IFGFSF-KGPVRDPFGSILAAIVESKIKVLSV 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,312
Number of Sequences: 5004
Number of extensions: 46338
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)