Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14c03f
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0694 - 26336742-26336957,26337731-26337950,26338777-26338976 56 3e-08
12_02_0747 - 22743259-22743268,22743686-22743773,22744334-227443... 54 1e-07
12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337 51 9e-07
04_03_1000 + 21604164-21605387,21605467-21605817 44 1e-04
06_01_0313 - 2250312-2250516,2250585-2250610,2250792-2251076,225... 30 1.8
01_05_0250 - 19907517-19908429,19910000-19910268 30 1.8
10_08_0785 - 20536265-20537032 29 2.4
01_05_0194 - 19107143-19108055,19110864-19111132 29 3.1
11_06_0184 - 21006659-21009823 29 4.1
08_01_1063 + 10839860-10840099,10840185-10840895 28 5.5
05_05_0311 - 24004380-24004440,24004685-24004756,24004875-240049... 28 5.5
03_05_0732 - 27232299-27232535,27232717-27232746,27233094-272331... 28 5.5
10_08_0842 - 20954712-20957738 28 7.2
03_05_0793 + 27755704-27756386,27756473-27757274,27757379-277576... 28 7.2
09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293 27 9.6
>11_06_0694 - 26336742-26336957,26337731-26337950,26338777-26338976
Length = 211
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = +1
Query: 364 SASNVRGWRALYVGAVATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQTILFPIYYAFNAC 543
S + V R +V AT GA +W+T + GIV++ LPRH+FG +Q +FP Y+ +
Sbjct: 32 SGAGVAAARLAHVLCFATAWGAALWVTFIGGIVMFKYLPRHQFGSLQGKMFPAYFMLISV 91
Query: 544 MSLLGLLAY 570
S + + A+
Sbjct: 92 CSAISVAAF 100
>12_02_0747 -
22743259-22743268,22743686-22743773,22744334-22744395,
22744728-22744915,22746276-22746495,22746647-22746855
Length = 258
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +1
Query: 412 ATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQTILFPIYYAFNACMSLLGLLAYLRTQCLT 591
AT GA +W T + GI+++ +LPRH+FG +Q LFP Y+ + + + + A+
Sbjct: 51 ATSWGAALWATFIGGIIMFKNLPRHQFGNLQGKLFPAYFMLISACAAVSVAAFAYLHPWK 110
Query: 592 EFENTSWIQLALLLA 636
QL LLA
Sbjct: 111 TASTVERYQLGFLLA 125
>12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337
Length = 200
Score = 50.8 bits (116), Expect = 9e-07
Identities = 20/61 (32%), Positives = 36/61 (59%)
Frame = +1
Query: 388 RALYVGAVATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQTILFPIYYAFNACMSLLGLLA 567
+A+++ AT G +W LV G++++ +LPRH GR++ +FP +A NA + A
Sbjct: 27 KAVHLLCFATSWGVTVWAILVGGVIMFLNLPRHAMGRLRGKVFPACFALNAACTAASAAA 86
Query: 568 Y 570
+
Sbjct: 87 F 87
>04_03_1000 + 21604164-21605387,21605467-21605817
Length = 524
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/54 (42%), Positives = 31/54 (57%)
Frame = +1
Query: 412 ATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQTILFPIYYAFNACMSLLGLLAYL 573
A GA +W+T VS VL +LPR + VQ+ LFP+Y+ A L L A+L
Sbjct: 318 AAAYGASLWVTFVSSYVLAAALPRQQLAMVQSKLFPMYFRAVAYGVGLALAAHL 371
>06_01_0313 -
2250312-2250516,2250585-2250610,2250792-2251076,
2251289-2251567,2251817-2252121,2252581-2252860,
2253209-2253475
Length = 548
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 387 EGAVRGGRGHSPRSSDMD---DACVRYRPILLPSETRVRP-RADHPVPYLLRVQRLHEL 551
EG V G H + +D D +++RPI+LP R P RA ++ V+R +EL
Sbjct: 447 EGTVGGFGSHVSQFISLDGLLDGKIKWRPIVLPDSNRTDPFRATPRRTFVDEVRRKNEL 505
>01_05_0250 - 19907517-19908429,19910000-19910268
Length = 393
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/68 (33%), Positives = 29/68 (42%)
Frame = +3
Query: 390 GAVRGGRGHSPRSSDMDDACVRYRPILLPSETRVRPRADHPVPYLLRVQRLHELAGTPGV 569
G RGG GH+P + + + L E+ + RAD LLRVQ L LA G
Sbjct: 2 GKKRGGHGHAPAAPPR----AGNQAVSLREESSGKTRAD--AASLLRVQHLQRLAAWAGG 55
Query: 570 PPHTVPYG 593
P G
Sbjct: 56 EARVGPLG 63
>10_08_0785 - 20536265-20537032
Length = 255
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 40 NRMCNMCTRDVTLEAPTPPKVSRTLERMKLK 132
N C C R + L+ P+PPK R E + L+
Sbjct: 193 NSSCPSCRRPIVLDDPSPPKRCRKCEAIVLE 223
>01_05_0194 - 19107143-19108055,19110864-19111132
Length = 393
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/68 (33%), Positives = 29/68 (42%)
Frame = +3
Query: 390 GAVRGGRGHSPRSSDMDDACVRYRPILLPSETRVRPRADHPVPYLLRVQRLHELAGTPGV 569
G RGG GH+P + + + L E+ + RAD LLRVQ L LA G
Sbjct: 2 GKKRGGHGHAPAAPPR----AGNQAVSLREESSGKTRAD--AASLLRVQHLQRLAAWAGG 55
Query: 570 PPHTVPYG 593
P G
Sbjct: 56 EAGAGPLG 63
>11_06_0184 - 21006659-21009823
Length = 1054
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 365 QLVTSAAGGRCTWGPWPLTSELR 433
+L T + GG C W PW + + R
Sbjct: 79 ELYTQSGGGHCGWQPWTMVARHR 101
>08_01_1063 + 10839860-10840099,10840185-10840895
Length = 316
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 534 ERVVDREQDGLHAAELVSRKGE 469
ER V+R+ +G H LVS KGE
Sbjct: 124 ERSVNRKDEGFHVVTLVSPKGE 145
>05_05_0311 -
24004380-24004440,24004685-24004756,24004875-24004946,
24005155-24005298,24005535-24005606,24006057-24006286
Length = 216
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 73 TLEAPTPPKVSR--TLERMKLKHNITTDPVNEE 165
T+ P PP + + +L+ M++ HN+ T P+ E
Sbjct: 131 TISGPIPPSLGKLKSLKFMRIDHNLLTGPIPNE 163
>03_05_0732 -
27232299-27232535,27232717-27232746,27233094-27233155,
27233975-27234005,27234618-27234713,27234881-27234969,
27235687-27236263
Length = 373
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 495 PRADHPVPY-LLRVQRLHELAGTPGVPPHTVPYGIREHLMDTASTTVS 635
P+ HP P + ++RLH L P PP P +H D ST S
Sbjct: 31 PQQQHPDPLNSVWIRRLHLLPHQPPPPPPPPPLPQPQHHHDAVSTDES 78
>10_08_0842 - 20954712-20957738
Length = 1008
Score = 27.9 bits (59), Expect = 7.2
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Frame = +3
Query: 420 PRSSDMDDACVRYRPILLPSETRVRPRA-----DHPVPYL-LRVQRLHELAG 557
P S D D RYR + PSE VRP DH V Y L V+RL + G
Sbjct: 750 PSSFDSDHPSHRYRFLDTPSEWLVRPVLETQGWDHDVGYEGLNVERLFAVKG 801
>03_05_0793 +
27755704-27756386,27756473-27757274,27757379-27757634,
27758355-27758566,27760494-27760709
Length = 722
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 538 ACMSLLGLLAYLRTQCLTEFENTSWIQLALLLAV 639
AC SLLGL+AYLR C I+ LL V
Sbjct: 337 ACRSLLGLVAYLRA-CFPTVSRQQAIRYLLLAEV 369
>09_04_0614 - 18962141-18962716,18962839-18963119,18964092-18964293
Length = 352
Score = 27.5 bits (58), Expect = 9.6
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +3
Query: 408 RGHSPRSSDMDDACVRYRPILLPSETRVRP--RADHPVPYLLRVQRLHELA-GTPGVPPH 578
R H P + DM P LLP+ + P R HP + + L A GTPG+ PH
Sbjct: 187 RSHHPYTLDMV-------PPLLPALLQQDPFGRGHHPYMNPVDMAELSRFARGTPGLHPH 239
Query: 579 TVPY 590
P+
Sbjct: 240 IQPH 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,452,980
Number of Sequences: 37544
Number of extensions: 355136
Number of successful extensions: 1203
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -