Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14c03f
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    31   0.53 
AC084158-18|AAK68583.1|  300|Caenorhabditis elegans Hypothetical...    30   1.2  
AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine re...    29   3.7  

>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +3

Query: 429  SDMDDACVRYRPILLPSETRVRPRADHPVPYLLRVQRLHELAGTPGVP 572
            ++MDDA +   P  + +E R R RA H  P +LR  RL    G  G P
Sbjct: 3113 AEMDDAELAGLPADMQNEAR-RARAQHVEPNMLRYHRLLFRGGVGGAP 3159


>AC084158-18|AAK68583.1|  300|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.9 protein.
          Length = 300

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 64  RDVTLEAPTPPKVSRTLE 117
           +DVT EAPTPPK ++T +
Sbjct: 155 KDVTAEAPTPPKTTKTTQ 172


>AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 68 protein.
          Length = 284

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 406 AVATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQTILFPIYYAFN 537
           AV   +   +W+T++ GI+    L      RV ++ FP +Y  N
Sbjct: 76  AVKNFIFITLWLTIIFGIIRTSLLFLTTLDRVISLFFPFFYCAN 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,967,969
Number of Sequences: 27780
Number of extensions: 279162
Number of successful extensions: 948
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)