Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14c02f
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    27   1.9  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   4.5  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   4.5  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   7.8  
SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces pombe...    25   7.8  

>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = -2

Query: 210 HTAHLMVSGYRCPWTSAMPGAEPSRCLPLSTTRTELSYL 94
           H  H M S    PW      A  ++CL        LSY+
Sbjct: 400 HGYHFMASSTELPWLRVTCNAIVTKCLDSQLPSVRLSYI 438


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 172 MDFSNARGRAKPLPTAIYNKNRTKLSTTFYKKFLERQKIKRLNS 41
           + + N R  A  LP+ IYN     + + FY     +Q I +  S
Sbjct: 649 LSYQNDRPLATDLPSVIYNHKHPNVVSPFYVHPYIKQGILKFQS 692


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 281 AIFS*LYKFQNFFLFFYCPCRQTSIRP 201
           AIF+ L+ +  FFLFF  P +     P
Sbjct: 300 AIFACLFPYTEFFLFFVYPVKAGIFMP 326


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +3

Query: 39  CELSLLIFCLSKNFL*NVVDSLVLFLL*IAVGSGLALPLALLK 167
           C L LLI+     F  N V  L+LF+L I VG+   + + LLK
Sbjct: 700 CLLLLLIYVPLNRFRVNRVLGLLLFILYI-VGTSTNIVVELLK 741


>SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 193

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 124 IYNKNRTKLSTTFYKKFLERQKIKRLNSHYFLSYKPLRQ 8
           I++ N    ++ F K+  E QK   L   + L+Y PL+Q
Sbjct: 47  IHSGNSASSTSIFAKREEELQKDLLLKKAWELAYSPLKQ 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,494
Number of Sequences: 5004
Number of extensions: 29544
Number of successful extensions: 65
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)