Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14c02f
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0315 - 7179332-7179949                                           28   3.4  
07_03_0224 + 15385572-15385747,15386311-15386383,15387310-153876...    28   4.5  
07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203...    27   6.0  
10_01_0291 + 3010685-3010838,3010954-3011489                           27   7.9  
07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792     27   7.9  
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050     27   7.9  

>09_02_0315 - 7179332-7179949
          Length = 205

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 116 VVDSGRQRLGSAPGIAEVHGQR*PLTIRWAVCSSAYKGN 232
           VV  GR   G A  +AEV  +  P  + W +CS  Y+GN
Sbjct: 76  VVPRGRVPRGGAR-VAEVLIEPGPERVAWVLCSWGYEGN 113


>07_03_0224 +
           15385572-15385747,15386311-15386383,15387310-15387658,
           15387814-15387860,15387948-15388025,15388328-15388398,
           15388514-15388601
          Length = 293

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +2

Query: 110 VLVVDSGRQRL---GSAPGIAEVHGQR*PLTIRWAVCSSAYKGNKKIKKSSETYRVKKIL 280
           V  VDSG++ L   GS P ++ +      +T  W    + Y   KKIK+SSE  ++  ++
Sbjct: 200 VTAVDSGKRALEILGSEPNVSMI------ITDYWMPEMTGYDLLKKIKESSELKQIPVVI 253

Query: 281 QS 286
            S
Sbjct: 254 MS 255


>07_01_0276 +
           2028983-2029070,2030084-2030151,2030317-2031246,
           2031334-2031415,2031544-2031609,2032606-2033304,
           2033422-2035424,2035599-2036173,2037060-2037223,
           2037306-2037365,2037475-2037839
          Length = 1699

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 241 YFFIALVGRRAYGPPDGEWLPLPMDFSNARGRAKPLP 131
           YF I L+ R A  PPD  +L L     + R +A+P P
Sbjct: 533 YFGIDLLVRVANAPPDAPFLLLGDVMPHLRAKARPPP 569


>10_01_0291 + 3010685-3010838,3010954-3011489
          Length = 229

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 240 IFLLPL*ADEHTAHLMVSGYRCPWTSAMPGAEPSRCLPLS 121
           +F +PL AD H++  +   +        PG EPS+ +P+S
Sbjct: 79  VFSIPLDADLHSSDCVAQLHGAT-NEPCPGQEPSKIVPMS 117


>07_03_1078 - 23789205-23790608,23791155-23791529,23791703-23791792
          Length = 622

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 194 IRWAVCSSAYKGNKKIKKSSETYRVKKI 277
           IRW   S      K+ ++SSE Y+VK++
Sbjct: 268 IRWKNTSEGNSYGKQARRSSEGYKVKRV 295


>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
          Length = 478

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +3

Query: 132 GSGLALPLALLKSMGNGNHSPSGGPYARL 218
           GS LA  L LL  M      PSG  YARL
Sbjct: 64  GSDLASSLRLLADMQAAGLRPSGAAYARL 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,396,902
Number of Sequences: 37544
Number of extensions: 190482
Number of successful extensions: 452
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)