Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14c02f
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024819-4|AAU20828.1|  469|Caenorhabditis elegans Hypothetical ...    29   2.3  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    29   2.3  
AF003137-8|AAB93645.3|  494|Caenorhabditis elegans Hypothetical ...    28   4.0  
AL023816-6|CAA19435.1|  341|Caenorhabditis elegans Hypothetical ...    27   7.0  
AL022274-3|CAA18359.1|  341|Caenorhabditis elegans Hypothetical ...    27   7.0  

>AC024819-4|AAU20828.1|  469|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3b protein.
          Length = 469

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 73  LERQKIKRLNSHYFLSYKPLRQKI 2
           L    +KRL  HYF++ +PL Q +
Sbjct: 166 LVESSVKRLEEHYFITIEPLEQDV 189


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 73  LERQKIKRLNSHYFLSYKPLRQKI 2
           L    +KRL  HYF++ +PL Q +
Sbjct: 620 LVESSVKRLEEHYFITIEPLEQDV 643


>AF003137-8|AAB93645.3|  494|Caenorhabditis elegans Hypothetical
           protein C27A12.8 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 441 LQCNN*QCVQTSKAYLNKYITNIAASD 361
           L CN+  C Q  KAYL   I N A S+
Sbjct: 140 LSCNHRACTQCWKAYLTNKIANNAQSE 166


>AL023816-6|CAA19435.1|  341|Caenorhabditis elegans Hypothetical
           protein T05G11.7 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 374 MFVMYLFKYAFDVCTHC*LLHCNIISLR 457
           +F +YLF     +C  C L  C I SLR
Sbjct: 53  IFTIYLFLMGISICDLCRLTSCIIESLR 80


>AL022274-3|CAA18359.1|  341|Caenorhabditis elegans Hypothetical
           protein T05G11.7 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 374 MFVMYLFKYAFDVCTHC*LLHCNIISLR 457
           +F +YLF     +C  C L  C I SLR
Sbjct: 53  IFTIYLFLMGISICDLCRLTSCIIESLR 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,330,567
Number of Sequences: 27780
Number of extensions: 171442
Number of successful extensions: 418
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)