Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14c02f
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.7  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   3.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   3.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 226 LVGRRAYGPPDGEWLPL 176
           L+G R   PP  +W PL
Sbjct: 408 LIGSRRTSPPPEDWKPL 424


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -1

Query: 199 PDGEWLPLPMDFSNARGRAKPLPT-AIYNKNRTKLSTTFYKKFLERQKIKRLNSHYFLSY 23
           PD + + +P      +   KPLPT  ++ +N  +    +Y+K L +    R++     +Y
Sbjct: 15  PDLDNVTMPETTPRRKKNKKPLPTECVFCRNNGE-EEAYYRKHLLKDADGRVSCPVLRAY 73


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 140 AAAYRYLQQEQN*AIYNILQKIFRKA 63
           +  + YL    N  +YNI+   FR+A
Sbjct: 333 SGVFYYLSTTVNPLLYNIMSNKFREA 358


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 202 PPDGEWLPLPMDFSNARG 149
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = -1

Query: 277 YFLDSISFRTFFYF 236
           YF++ I   T+++F
Sbjct: 222 YFIEDIGLNTYYFF 235


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = -1

Query: 277 YFLDSISFRTFFYF 236
           YF++ I   T+++F
Sbjct: 222 YFIEDIGLNTYYFF 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,487
Number of Sequences: 438
Number of extensions: 2134
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)