Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b24r
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    28   1.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.6  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   6.4  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    25   8.4  
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    25   8.4  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   8.4  

>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 200 STTWTSPIRTYRGLLNSQQIIIASSSPTANCPRTS 96
           ST  T+P  T R  L S  ++  SSSP  N P++S
Sbjct: 41  STRLTTPRTTARTPLASSPLLFESSSPGPNIPQSS 75


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 23/70 (32%), Positives = 29/70 (41%)
 Frame = -3

Query: 576  THLITGPGIDPIAKSPSWLKDTGSITSLEVGGDSASEWLRVVPTGFANLLRWCKSSYNDP 397
            T  + G G D  A S SW  +T S  S      +AS    V PT  ++   W  SS  DP
Sbjct: 912  TSSVVGSGTDS-ATSSSWTAETSS--SAITSSVAAS----VTPTSSSSASSWSSSSEVDP 964

Query: 396  PIYITENGFS 367
                +  G S
Sbjct: 965  STAASATGSS 974


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -2

Query: 187 HHRSGPTEDS*TLSRLLSPARRQPRTAPGRAF*GPSCEEINPKSIRLMKY 38
           H R+ PT  S     L S A R P  A G  +  PS   + P+S  +  Y
Sbjct: 485 HSRATPTR-SVEAPTLPSYAPRHPTQANGSRYMNPSTSRMTPQSPYMQNY 533


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
 Frame = -3

Query: 348 DYGRIQYYNDYLSAILDVIYDDGVRV-----LGYTAW 253
           D  RI+Y+N Y+  I   I+D  + +     L YT+W
Sbjct: 156 DIDRIKYWNPYICLIKPSIFDLAITIGDNSTLLYTSW 192


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 544 WVDSGASNQVCSIVVNTQKIGSSLNPLNPIIIKLF 648
           W  S   NQ  +     ++ GS   PLNPI+ +LF
Sbjct: 89  WFASTLKNQYAA---RNERYGSEKKPLNPILGELF 120


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 404 LYELLHQRSRLAKPVGTTLSHSEAESPPTSR 496
           LY LL   ++L     T + HSE E P  S+
Sbjct: 572 LYSLLQYENKLTVSQFTAMQHSEYEEPIESK 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,608
Number of Sequences: 5004
Number of extensions: 71624
Number of successful extensions: 193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)