Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b24r
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   3.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.9  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.2  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.0  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 341 DASSITTTICLRYWML 294
           D  S TTT+  R+W++
Sbjct: 106 DTVSFTTTVSARFWLM 121


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 214 RESSTPFEIVHKSPRGVTQDSHAIIVDNIQYRRQIVVVILDASVVLQGTAIG 369
           R+SS  FE+     R  T+D+      N+++ R  V+V+ + S  +   A+G
Sbjct: 40  RQSS--FEVTSLLMREETEDAEDTQTLNLKHLRAAVLVLTNPSNEVVAVALG 89


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 339 VRSLARYRDRKIHFQLCKSVGHCTSSCTN 425
           V SL+ Y D+ I    C S  + T S +N
Sbjct: 148 VHSLSDYNDKPIPASCCNSPENNTCSISN 176


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -1

Query: 53  PADEILTTKKKHASLIT 3
           PA+++LTT+K +  ++T
Sbjct: 406 PANDLLTTEKDNNEIVT 422


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 149 QQIIIASSSPTANCPRTSVL 90
           Q +++ + + T N P TSV+
Sbjct: 828 QSVVVTNVTTTINTPTTSVI 847


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,483
Number of Sequences: 438
Number of extensions: 4845
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)