Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b24f
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    29   0.52 
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    27   2.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   2.7  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    26   3.6  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    26   3.6  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    26   4.8  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   6.3  
SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    25   8.4  
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    25   8.4  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   8.4  

>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
 Frame = +3

Query: 294 SSLTLALIFTGSRFPGHGYCQLVSRIT*ILTEFGTITLSSMLLPRKISSLLSHSFTGTYL 473
           +S T +LI + S         + S +T  ++     +L S L  ++ISS  S  F G   
Sbjct: 589 TSYTSSLIPSSSTDYSSSLITVCSNVTSEISSTSLASLISTLTSQQISSNKSSEFVGQTT 648

Query: 474 SHYKTS-----------EAGLIPKWLIISVITPTCATGNSVTRLSRGLLLT 593
           + Y TS           ++G +P  +++ V TP+  T  +VT  S G   T
Sbjct: 649 TEYTTSGSVGFTTTLATQSGSVPGTVLVDVPTPSWIT-ETVTSGSVGFTTT 698


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
 Frame = +3

Query: 411 SMLLPRKISSLLSHSFTGTYLSHYKTSEAGLIPKWL-IISVITP-----TCATG--NSVT 566
           S L    I S +S  F   YL+ Y  S   ++ + L +++++ P     T + G  NS+ 
Sbjct: 394 SFLKTMAILSFVSIVFIAIYLNLYNASFGHVVLRSLDVLTILVPPALPATLSVGIANSIA 453

Query: 567 RLSRGLLLT 593
           RLSR L+ T
Sbjct: 454 RLSRALIYT 462


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +3

Query: 414 MLLPRKISSLLSHSFTGTYLSHYKTSEAGLIPKWLIISVI---TPTCATGNSVTRLSRG 581
           +L P ++ ++ +H  +   L+H   +E    P W+II+V+    P+     SV   SRG
Sbjct: 207 LLSPLEVHTIFTH-ISSEDLAHLGLNEQYARPDWMIITVLPVPPPSVRPSISVDGTSRG 264


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +2

Query: 428 KNIEPLVTLFHWDLPQSLQDLGGWTNSKMVDYFRDYSDVCYREFGDKIKSW 580
           + I+  VTL  W LP+++         K+ D  +++  + Y+   +K   W
Sbjct: 103 REIKSSVTLLDWILPRTISLFADIRFIKLFDSLKEFHKLIYQLISEKSFLW 153


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 341 SRILPTGFSDHVNPDGIRYY 400
           S+ LP G+++H  P GI YY
Sbjct: 2   SQPLPPGWTEHKAPSGIPYY 21


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 446 VTLFHWDLPQSLQDLGGWTNSKMVDYF 526
           +T   W +P+ +Q +GG     +++YF
Sbjct: 11  LTSIQWRMPEWVQSMGGLRTENVLEYF 37


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 391 NSVRIHVIRETSWQYP*PGKREPVKINAK 305
           N++  H+   T +QY  PGK + +K+  K
Sbjct: 210 NNISAHISLATIYQYGTPGKLKDIKLAVK 238


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +2

Query: 206 THTRPEMIADGTNGDVACDSYHRYLEDVEELTYLGVDFYRFSLSWSRILPTGFSDHV 376
           T T  + + +G +    CD YH   ++V +  +  +DF  F  + +    TG + H+
Sbjct: 274 TATETKALEEGVSPKELCDKYHALHKEVYD--WFEIDFDHFGRT-TTPKQTGIAQHI 327


>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 381 LTEFGTITLSSMLLPRKISSLLSHSF 458
           L +FG+ITL ++ L RKI ++L   F
Sbjct: 256 LEKFGSITLVTITLTRKIFTMLLSVF 281


>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 413 DALAEKNIEPLVTLFHWDLPQSLQDLGGWTNSKMVDYFRDYSDVCYREFGDKIK 574
           D+L   +   L +L   +      D   +  SK V+YFR+Y  +C R+     K
Sbjct: 213 DSLVNTSASCLQSLLDGEKVYGTSDKDFYVPSKNVEYFREYF-LCIRDLSQYYK 265


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 160 CLECQREIRKCVGSF 204
           C+EC++   KCVG+F
Sbjct: 117 CVECKKHKIKCVGNF 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,584
Number of Sequences: 5004
Number of extensions: 62458
Number of successful extensions: 197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)