Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14b24f
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical ... 166 1e-41
U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical pr... 162 2e-40
U70854-2|AAO91721.1| 575|Caenorhabditis elegans Hypothetical pr... 29 1.9
U70854-1|AAB09146.1| 589|Caenorhabditis elegans Hypothetical pr... 29 1.9
U56860-5|AAP40524.1| 685|Caenorhabditis elegans Intermediate fi... 29 2.5
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 29 2.5
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 29 2.5
AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome re... 29 3.3
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p... 28 4.4
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p... 28 4.4
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p... 28 4.4
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p... 28 4.4
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr... 28 4.4
U40952-2|AAA81737.1| 818|Caenorhabditis elegans Hypothetical pr... 28 4.4
AY390553-1|AAQ94965.1| 239|Caenorhabditis elegans SMA-9 protein. 28 4.4
AY390541-1|AAQ94953.1| 521|Caenorhabditis elegans SMA-9 class I... 28 4.4
AY390540-1|AAQ94952.1| 405|Caenorhabditis elegans SMA-9 class I... 28 4.4
AY390539-1|AAQ94951.1| 465|Caenorhabditis elegans SMA-9 class I... 28 4.4
AY390538-1|AAQ94950.1| 591|Caenorhabditis elegans SMA-9 class I... 28 4.4
AL132952-10|CAB63384.1| 591|Caenorhabditis elegans Hypothetical... 28 4.4
AF125445-1|AAD12803.2| 550|Caenorhabditis elegans Hypothetical ... 28 4.4
Z81461-1|CAB03833.1| 944|Caenorhabditis elegans Hypothetical pr... 27 7.7
AF045639-5|AAC02569.2| 937|Caenorhabditis elegans Osmotic avoid... 27 7.7
AF031408-1|AAB87064.1| 937|Caenorhabditis elegans olfactory cha... 27 7.7
>AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical
protein E02H9.5 protein.
Length = 475
Score = 166 bits (403), Expect = 1e-41
Identities = 75/166 (45%), Positives = 110/166 (66%), Gaps = 1/166 (0%)
Frame = +2
Query: 101 TKFPDGFTFGVATASHQIEGAWNVSGKSENVWDRLTHTRPEMIADGTNGDVACDSYHRYL 280
TKFP F ATA++QIEGA +++G+ + WD + P I D ++ D++CD +Y
Sbjct: 5 TKFPKNFKLATATAAYQIEGAKDLNGRGFSTWDAI-RLEPGRILDNSDPDLSCDGLLKYK 63
Query: 281 EDVEELTYLGVDFYRFSLSWSRILPTGFSDHVNPDGIRYYNALLDALAEKNIEPLVTLFH 460
EDV L +GV YRFS+SWSRILP G +N +GI++Y L L E NIEP+VTLFH
Sbjct: 64 EDVALLAEIGVTNYRFSISWSRILPDGTLSTINEEGIKFYRDLCLLLKENNIEPVVTLFH 123
Query: 461 WDLPQSLQDLG-GWTNSKMVDYFRDYSDVCYREFGDKIKSWITINE 595
+D+P ++ D G W N + ++F ++D+C+++FGD +K+WIT NE
Sbjct: 124 FDMPLAIYDNGTAWLNRENCEHFEKFADLCFQKFGDLVKTWITYNE 169
>U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical
protein C50F7.10 protein.
Length = 479
Score = 162 bits (393), Expect = 2e-40
Identities = 73/166 (43%), Positives = 109/166 (65%), Gaps = 1/166 (0%)
Frame = +2
Query: 101 TKFPDGFTFGVATASHQIEGAWNVSGKSENVWDRLTHTRPEMIADGTNGDVACDSYHRYL 280
TKFP F ATA++QIEGA N+ G+ + WD + + I D ++ D++C+ +Y
Sbjct: 5 TKFPKNFQLATATAAYQIEGAKNLDGRGFSTWDSI-RSENGRIHDNSDPDLSCEGRLKYK 63
Query: 281 EDVEELTYLGVDFYRFSLSWSRILPTGFSDHVNPDGIRYYNALLDALAEKNIEPLVTLFH 460
EDV L+ +GV YRFS+SWSRILP G +N DGI++Y + L + IEP+VTLFH
Sbjct: 64 EDVALLSKIGVTSYRFSISWSRILPDGTLKTINEDGIQFYRDICLLLRDNGIEPIVTLFH 123
Query: 461 WDLPQSLQDLG-GWTNSKMVDYFRDYSDVCYREFGDKIKSWITINE 595
+D+P S+ D G W N + ++F ++D+C+++FGD +K+WIT NE
Sbjct: 124 FDMPLSIYDNGTSWLNKENCEHFEKFADLCFQKFGDLVKTWITFNE 169
>U70854-2|AAO91721.1| 575|Caenorhabditis elegans Hypothetical
protein F38A5.1b protein.
Length = 575
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 263 SYHRYLEDVEELTYLGVDFYRFSLSWSRILPTGFSDHVNPDGIRYYNALLD 415
+YH Y++D + + G + F WS + G++D P AL+D
Sbjct: 391 NYHHYMQDGIDDSGWGCAYRSFQTIWSWFILNGYTDKPVPSHREIQQALVD 441
>U70854-1|AAB09146.1| 589|Caenorhabditis elegans Hypothetical
protein F38A5.1a protein.
Length = 589
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +2
Query: 263 SYHRYLEDVEELTYLGVDFYRFSLSWSRILPTGFSDHVNPDGIRYYNALLD 415
+YH Y++D + + G + F WS + G++D P AL+D
Sbjct: 405 NYHHYMQDGIDDSGWGCAYRSFQTIWSWFILNGYTDKPVPSHREIQQALVD 455
>U56860-5|AAP40524.1| 685|Caenorhabditis elegans Intermediate
filament, c protein2, isoform c protein.
Length = 685
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 446 QEARYFSRQEHRGERYSTEFRQDSRDPRNQLAISVT 339
QE Y +Q+HR Y T RQ+ ++ NQ + S T
Sbjct: 291 QEQGYQQQQQHRSREYKTH-RQEKQENYNQRSYSAT 325
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 446 QEARYFSRQEHRGERYSTEFRQDSRDPRNQLAISVT 339
QE Y +Q+HR Y T RQ+ ++ NQ + S T
Sbjct: 291 QEQGYQQQQQHRSREYKTH-RQEKQENYNQRSYSAT 325
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 446 QEARYFSRQEHRGERYSTEFRQDSRDPRNQLAISVT 339
QE Y +Q+HR Y T RQ+ ++ NQ + S T
Sbjct: 291 QEQGYQQQQQHRSREYKTH-RQEKQENYNQRSYSAT 325
>AF039052-4|AAF98630.1| 981|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 1 protein.
Length = 981
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 173 SGKSENVWDRLTHTRPEMIADGTNGDVACDSYHRYLEDVEELTYL 307
+GK + + THT P ++A G ++A D Y +E L L
Sbjct: 922 AGKPKTITGFQTHTTPVLLAHGERAELANDEYLSVTPHLEGLVIL 966
>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
protein T05A10.1a protein.
Length = 2066
Score = 28.3 bits (60), Expect = 4.4
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +2
Query: 182 SENVWDRLTHTRPEMIADGTNGDVACDSYHRYLEDVEELTYLGVDFYRFSLSWSRILPTG 361
SE++ DRL + RP I D T + D + +E +L VD R P
Sbjct: 1916 SESLSDRLHNKRPRPIPDNTKCQICADEFS---TPIELQVHLHVDHVRMMDGAEYKCPRK 1972
Query: 362 FS--DHVNPDGIR-YYNALLDALAEKNIEPLVTLFHWDLP 472
F ++ + D +R + A + +K +E V L D P
Sbjct: 1973 FCGLNYESLDSLRAHVTAHYETDRQKLLEEKVLLAEADFP 2012
>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
protein T05A10.1f protein.
Length = 2048
Score = 28.3 bits (60), Expect = 4.4
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +2
Query: 182 SENVWDRLTHTRPEMIADGTNGDVACDSYHRYLEDVEELTYLGVDFYRFSLSWSRILPTG 361
SE++ DRL + RP I D T + D + +E +L VD R P
Sbjct: 1898 SESLSDRLHNKRPRPIPDNTKCQICADEFS---TPIELQVHLHVDHVRMMDGAEYKCPRK 1954
Query: 362 FS--DHVNPDGIR-YYNALLDALAEKNIEPLVTLFHWDLP 472
F ++ + D +R + A + +K +E V L D P
Sbjct: 1955 FCGLNYESLDSLRAHVTAHYETDRQKLLEEKVLLAEADFP 1994
>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
protein T05A10.1e protein.
Length = 2101
Score = 28.3 bits (60), Expect = 4.4
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +2
Query: 182 SENVWDRLTHTRPEMIADGTNGDVACDSYHRYLEDVEELTYLGVDFYRFSLSWSRILPTG 361
SE++ DRL + RP I D T + D + +E +L VD R P
Sbjct: 1951 SESLSDRLHNKRPRPIPDNTKCQICADEFS---TPIELQVHLHVDHVRMMDGAEYKCPRK 2007
Query: 362 FS--DHVNPDGIR-YYNALLDALAEKNIEPLVTLFHWDLP 472
F ++ + D +R + A + +K +E V L D P
Sbjct: 2008 FCGLNYESLDSLRAHVTAHYETDRQKLLEEKVLLAEADFP 2047
>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
protein T05A10.1d protein.
Length = 2134
Score = 28.3 bits (60), Expect = 4.4
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +2
Query: 182 SENVWDRLTHTRPEMIADGTNGDVACDSYHRYLEDVEELTYLGVDFYRFSLSWSRILPTG 361
SE++ DRL + RP I D T + D + +E +L VD R P
Sbjct: 1984 SESLSDRLHNKRPRPIPDNTKCQICADEFS---TPIELQVHLHVDHVRMMDGAEYKCPRK 2040
Query: 362 FS--DHVNPDGIR-YYNALLDALAEKNIEPLVTLFHWDLP 472
F ++ + D +R + A + +K +E V L D P
Sbjct: 2041 FCGLNYESLDSLRAHVTAHYETDRQKLLEEKVLLAEADFP 2080
>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical protein
T05A10.1c protein.
Length = 1692
Score = 28.3 bits (60), Expect = 4.4
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +2
Query: 182 SENVWDRLTHTRPEMIADGTNGDVACDSYHRYLEDVEELTYLGVDFYRFSLSWSRILPTG 361
SE++ DRL + RP I D T + D + +E +L VD R P
Sbjct: 1542 SESLSDRLHNKRPRPIPDNTKCQICADEFS---TPIELQVHLHVDHVRMMDGAEYKCPRK 1598
Query: 362 FS--DHVNPDGIR-YYNALLDALAEKNIEPLVTLFHWDLP 472
F ++ + D +R + A + +K +E V L D P
Sbjct: 1599 FCGLNYESLDSLRAHVTAHYETDRQKLLEEKVLLAEADFP 1638
>U40952-2|AAA81737.1| 818|Caenorhabditis elegans Hypothetical
protein C03B1.7 protein.
Length = 818
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -3
Query: 482 VMTEVSPSERV*QEARYFSRQEHRGERYST-EFRQDSRDPRNQLAISVTRKARTGKNQRQ 306
++ E++P V ++ R + ++ E+ +T EF+ ++ + N A SV TGK +R+
Sbjct: 253 LIKELNPEMMVGRDGRRYRQKLREAEKQATVEFKLENFEQTNGEAQSVENDILTGKEKRR 312
Query: 305 GK 300
K
Sbjct: 313 LK 314
>AY390553-1|AAQ94965.1| 239|Caenorhabditis elegans SMA-9 protein.
Length = 239
Score = 28.3 bits (60), Expect = 4.4
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +2
Query: 182 SENVWDRLTHTRPEMIADGTNGDVACDSYHRYLEDVEELTYLGVDFYRFSLSWSRILPTG 361
SE++ DRL + RP I D T + D + +E +L VD R P
Sbjct: 89 SESLSDRLHNKRPRPIPDNTKCQICADEFS---TPIELQVHLHVDHVRMMDGAEYKCPRK 145
Query: 362 FS--DHVNPDGIR-YYNALLDALAEKNIEPLVTLFHWDLP 472
F ++ + D +R + A + +K +E V L D P
Sbjct: 146 FCGLNYESLDSLRAHVTAHYETDRQKLLEEKVLLAEADFP 185
>AY390541-1|AAQ94953.1| 521|Caenorhabditis elegans SMA-9 class Ib
protein.
Length = 521
Score = 28.3 bits (60), Expect = 4.4
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +2
Query: 182 SENVWDRLTHTRPEMIADGTNGDVACDSYHRYLEDVEELTYLGVDFYRFSLSWSRILPTG 361
SE++ DRL + RP I D T + D + +E +L VD R P
Sbjct: 371 SESLSDRLHNKRPRPIPDNTKCQICADEFS---TPIELQVHLHVDHVRMMDGAEYKCPRK 427
Query: 362 FS--DHVNPDGIR-YYNALLDALAEKNIEPLVTLFHWDLP 472
F ++ + D +R + A + +K +E V L D P
Sbjct: 428 FCGLNYESLDSLRAHVTAHYETDRQKLLEEKVLLAEADFP 467
>AY390540-1|AAQ94952.1| 405|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 405
Score = 28.3 bits (60), Expect = 4.4
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +2
Query: 182 SENVWDRLTHTRPEMIADGTNGDVACDSYHRYLEDVEELTYLGVDFYRFSLSWSRILPTG 361
SE++ DRL + RP I D T + D + +E +L VD R P
Sbjct: 255 SESLSDRLHNKRPRPIPDNTKCQICADEFS---TPIELQVHLHVDHVRMMDGAEYKCPRK 311
Query: 362 FS--DHVNPDGIR-YYNALLDALAEKNIEPLVTLFHWDLP 472
F ++ + D +R + A + +K +E V L D P
Sbjct: 312 FCGLNYESLDSLRAHVTAHYETDRQKLLEEKVLLAEADFP 351
>AY390539-1|AAQ94951.1| 465|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 465
Score = 28.3 bits (60), Expect = 4.4
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +2
Query: 182 SENVWDRLTHTRPEMIADGTNGDVACDSYHRYLEDVEELTYLGVDFYRFSLSWSRILPTG 361
SE++ DRL + RP I D T + D + +E +L VD R P
Sbjct: 315 SESLSDRLHNKRPRPIPDNTKCQICADEFS---TPIELQVHLHVDHVRMMDGAEYKCPRK 371
Query: 362 FS--DHVNPDGIR-YYNALLDALAEKNIEPLVTLFHWDLP 472
F ++ + D +R + A + +K +E V L D P
Sbjct: 372 FCGLNYESLDSLRAHVTAHYETDRQKLLEEKVLLAEADFP 411
>AY390538-1|AAQ94950.1| 591|Caenorhabditis elegans SMA-9 class Ia
protein.
Length = 591
Score = 28.3 bits (60), Expect = 4.4
Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +2
Query: 182 SENVWDRLTHTRPEMIADGTNGDVACDSYHRYLEDVEELTYLGVDFYRFSLSWSRILPTG 361
SE++ DRL + RP I D T + D + +E +L VD R P
Sbjct: 441 SESLSDRLHNKRPRPIPDNTKCQICADEFS---TPIELQVHLHVDHVRMMDGAEYKCPRK 497
Query: 362 FS--DHVNPDGIR-YYNALLDALAEKNIEPLVTLFHWDLP 472
F ++ + D +R + A + +K +E V L D P
Sbjct: 498 FCGLNYESLDSLRAHVTAHYETDRQKLLEEKVLLAEADFP 537
>AL132952-10|CAB63384.1| 591|Caenorhabditis elegans Hypothetical
protein Y51H4A.13 protein.
Length = 591
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -3
Query: 563 HRIPCSTRRSNHGNNQPFWN*SSLRGLVMTEVSPSERV 450
HR S+ R HGN+QP N SS R ++ SP E V
Sbjct: 315 HRRRYSSPRRFHGNHQPRRNPSSTRLVIRYGSSPPEVV 352
>AF125445-1|AAD12803.2| 550|Caenorhabditis elegans Hypothetical
protein Y24D9B.1 protein.
Length = 550
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -3
Query: 563 HRIPCSTRRSNHGNNQPFWN*SSLRGLVMTEVSPSERV 450
HR S+ R HGN+QP N SS R ++ SP E V
Sbjct: 315 HRRRYSSPRRFHGNHQPRRNPSSTRLVIRYGSSPPEVV 352
>Z81461-1|CAB03833.1| 944|Caenorhabditis elegans Hypothetical
protein C04F12.1 protein.
Length = 944
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -1
Query: 253 NISVGSISYHLRAGVG*TIPHIFGFPADIPSTLDLMGSCCHTECKAVRKLSVC 95
N+ G +++ +R V +I H++G D +TL + CH+ K +K +C
Sbjct: 641 NLKYGGVNHKVR--VDNSISHLWG---DTSNTLIISYDVCHSSGKVYKKDEIC 688
>AF045639-5|AAC02569.2| 937|Caenorhabditis elegans Osmotic
avoidance abnormal protein9 protein.
Length = 937
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 290 EELTYLGVDFYRFSLSWSRILPTGFSDHVNPDGIRYYNALL 412
E L + V+F+RFS P D + PDG Y++ L
Sbjct: 315 EMLEIMKVEFWRFSDMTCSAYPLNTLDTIQPDGSTNYDSAL 355
>AF031408-1|AAB87064.1| 937|Caenorhabditis elegans olfactory
channel protein.
Length = 937
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 290 EELTYLGVDFYRFSLSWSRILPTGFSDHVNPDGIRYYNALL 412
E L + V+F+RFS P D + PDG Y++ L
Sbjct: 315 EMLEIMKVEFWRFSDMTCSAYPLNTLDTIQPDGSTNYDSAL 355
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,575,929
Number of Sequences: 27780
Number of extensions: 358835
Number of successful extensions: 1063
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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