Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b24f
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    26   0.24 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.56 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.0  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   4.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.0  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   4.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.9  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   6.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.2  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   9.2  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 84  VWHTASIERVVNQAIVSSRTADLL 13
           V+HT+ +  V N  IVS   ADL+
Sbjct: 90  VYHTSKLRNVTNMFIVSLAVADLM 113


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 267 YESHATSPLVPSAIIS 220
           +E HA+SPL PSA+ S
Sbjct: 688 WEDHASSPLEPSAVPS 703


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 77  CHTGLAAYTKFPD 115
           CHTGL  Y   PD
Sbjct: 274 CHTGLGHYGHHPD 286


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 563 DKIKSWITINEP 598
           DK+  W T NEP
Sbjct: 87  DKLAEWFTTNEP 98


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 427 EKYRASCHTLSLGLTSVITRPRR 495
           E+Y A CH L +   S + RP R
Sbjct: 138 ERYLAICHPLRVYTISGLKRPIR 160


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 563 DKIKSWITINEP 598
           DK+  W T NEP
Sbjct: 87  DKLAEWFTTNEP 98


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +2

Query: 89  LAAYTKFPDGFTFGVATASHQIEGAWNVSGKSENVWDRLTHTRPEMIADGTN 244
           L+  T  P+   + +   +H I   +NV  K  +V D     +  +I   TN
Sbjct: 239 LSGETNDPNKTEYTLKIYTHDIPETYNVVRKFRDVLDEFPQPKHMLIEAYTN 290


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 53  TTLSILAVCHTGLAAYTKFPDGFTF 127
           +T SIL +C   L  Y    D FT+
Sbjct: 130 STASILNLCVISLDRYWAITDPFTY 154


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +2

Query: 89  LAAYTKFPDGFTFGVATASHQIEGAWNVSGKSENVWDRLTHTRPEMIADGTN 244
           L+  T  P+   + +   +H I   +NV  K  +V D     +  +I   TN
Sbjct: 239 LSGETNDPNKTEYTLKIYTHDIPETYNVVRKFRDVLDEFPQPKHMLIEAYTN 290


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 356 TGFSDHVNPDGIRYYNAL 409
           T +  HV+PD ++Y+  L
Sbjct: 317 TCYLSHVDPDVVQYFGYL 334


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 356 TGFSDHVNPDGIRYYNAL 409
           T +  HV+PD ++Y+  L
Sbjct: 23  TCYLSHVDPDVVQYFGYL 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,682
Number of Sequences: 438
Number of extensions: 4235
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)