Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b23r
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    51   2e-07
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    48   2e-06
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    33   0.036
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    29   0.58 
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    27   2.3  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    27   3.1  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      26   5.4  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   5.4  
SPBC32F12.03c |gpx1||glutathione peroxidase Gpx1|Schizosaccharom...    25   7.2  

>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 17/174 (9%)
 Frame = -1

Query: 555 IVAQMFVFXAAGFETSSSATSYTLHQLAFHQEIQKEIQCEIDEVLSRHDNKLCYDAILEM 376
           I   M     AG  TS++   + L  L    EI + +  E   V+  +  +L +D   +M
Sbjct: 278 IAGMMIALLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVGEN-LELKFDQYKDM 336

Query: 375 PLLTMAFKEALRMFPSLGNLHRVCTRSYTIPELGITIDPGVRIIIPAQAIQNDAKYFDDP 196
           PLL    +E LR+ P + +  R   R   +P   I I     ++        + +YF   
Sbjct: 337 PLLNYVIQETLRLHPPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLTATEEEYFTHA 396

Query: 195 SEFRPKRF----AKDSEIKKFS-------------FLPFGAGPRNCIGARLGEM 85
           ++F PKR+     +D   ++               +LPFGAG   CIG +   M
Sbjct: 397 TDFDPKRWNDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCIGEQFAYM 450


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 3/160 (1%)
 Frame = -1

Query: 534 FXAAGFETSSSATSYTLHQLAFHQEIQKEIQCEIDEVLSRH-DNKLCYDAILEMPLLTMA 358
           F  A  + +SSA ++    LA H ++ ++++ E   +     D  L  D + +M      
Sbjct: 316 FLFASQDATSSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPLSLDLMEKMTYTRAV 375

Query: 357 FKEALRMFPSLGNLHRVCTRSYTIPELGITIDPGVRIIIPAQAIQNDAKYFDDPSEFRPK 178
            KE LR+ P +  +     +++ I     T+     +I       +D+K + +P  F P 
Sbjct: 376 VKECLRLRPPVLMVPYRVKKAFPITP-DYTVPKDAMVIPTLYGALHDSKVYPEPETFNPD 434

Query: 177 RFAKD--SEIKKFSFLPFGAGPRNCIGARLGEMQSLAGXG 64
           R+A +  +E    +++ FG GP  C+G R      +A  G
Sbjct: 435 RWAPNGLAEQSPKNWMVFGNGPHVCLGQRYAVNHLIACIG 474


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
 Frame = -1

Query: 468 HQEIQKEIQCEIDEVLSRHDNKLCYDAILE----MPLLTMAFKE-ALRMFPSLGNLHRVC 304
           ++++Q E + +ID+V +   + + YD   E    +PL ++   E  +++F S    HR+C
Sbjct: 672 NEDLQSETE-DIDQVPTSSSSSVTYDDESEPMYVLPLYSLLTTEDQMKVFDSSPEGHRMC 730

Query: 303 TRSYTIPELGITIDPGVRIII 241
             +  + E  ITI P +R ++
Sbjct: 731 IVATNVAETSITI-PNIRYVV 750


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 22/81 (27%), Positives = 39/81 (48%)
 Frame = +2

Query: 152 LISESLANRFGRNSLGSSKYFASFCIACAGIMILTPGSMVIPNSGIVYDLVQTLCKFPRD 331
           +I+E +  R  R  L +SK      I  A +  + PG   I N+G + D +    K  R 
Sbjct: 116 IIAEGVPERRAREILVTSKEKNVVIIGPATVGGIKPGCFKIGNTGGMMDNI-VASKLYRP 174

Query: 332 GNILNASLNAIVNNGISNMAS 394
           G++   S +  ++N ++N+ S
Sbjct: 175 GSVAYVSKSGGMSNELNNIIS 195


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 297 SYTIPELGITIDPGVRIIIPAQAIQNDAKYFDD 199
           ++ + E   T  PGVRII+    I N   Y DD
Sbjct: 518 AHFVSEFNAT-QPGVRIILAGTTILNSTAYIDD 549


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -1

Query: 507 SSATSYTLHQLAFHQEIQKEIQCEI 433
           SSA S  +HQ+A  QEI KE Q +I
Sbjct: 100 SSAISSCIHQIAKLQEIVKEQQSQI 124


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 227 YRTTRNTSTIPANFVRSGSLKIRRLKSFRFY 135
           +R   N STIP N++ + +++ R+ K+   Y
Sbjct: 30  FRRISNASTIPKNYLNNSTVENRKYKTMFGY 60


>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = -1

Query: 555  IVAQMFVFXAAGFETSSSATSYTLHQLAFHQEIQKEIQCEIDE---VLSRHDNKLCYDAI 385
            ++ Q+F F   GFE      +     L F++ I   +Q    E   V+S     + Y  I
Sbjct: 921  LIIQLFTFYLIGFEEEGKMLAVCFSCLIFNELIMVALQINTWEQTIVMSELLTLMMY--I 978

Query: 384  LEMPLLTMAFK 352
            L +P LT  F+
Sbjct: 979  LSVPFLTNYFE 989


>SPBC32F12.03c |gpx1||glutathione peroxidase
           Gpx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 158

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 137 KNENFLISESLANRFGRNSLGSSKYFASFC 226
           K+  F+I     N+FG    GS +  A FC
Sbjct: 53  KDRGFIILGFPCNQFGNQEPGSDEEIAQFC 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,651
Number of Sequences: 5004
Number of extensions: 54676
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)