Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b23f
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    28   1.1  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   1.5  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    25   7.7  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   7.7  

>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 84  HEIIITG-RRGEYVMIHRYRSSETIFATSSVLK 179
           H ++  G  RG+ VM++ YR  + + A   VLK
Sbjct: 327 HHLVKNGIERGDVVMVYAYRGVDLVVAVMGVLK 359


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -1

Query: 274 SHYEFRLGASVVAHDFFIWILIVKLNRQFNYTFKTEDVAKMVSEERYRWIMTYSPL 107
           S   FR G S+  HD+ +W      N + + T+  E+V   +++ +  ++  Y  L
Sbjct: 719 SGLRFRRGRSIFNHDYVVW--FGDFNYRISLTY--EEVVPCIAQGKLSYLFEYDQL 770


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 326 HRGLGRNTDLEPLLRNLFHVDGDAWK-LLRKRLTPAF 433
           HR LG + D+E ++++ F  DG  WK L  K ++P F
Sbjct: 510 HR-LGAHGDVEEVMKHPFF-DGIDWKKLAAKEISPPF 544


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 392 DAWKLLRKRLTPAFTTAKLKAMFPLVINCAEKMKSVAGEY 511
           + WK +   L   F+TA    +F  V+N  ++   VA  Y
Sbjct: 776 EVWKSIMAALIYVFSTATEDTVFYRVVNGIQQATEVAAAY 815


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,015
Number of Sequences: 5004
Number of extensions: 49943
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)