Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14b19f
(613 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 154 8e-39
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 153 1e-38
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 32 0.075
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 31 0.13
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 28 0.93
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 2.1
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 6.5
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 25 6.5
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 25 8.6
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 25 8.6
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 154 bits (374), Expect = 8e-39
Identities = 70/113 (61%), Positives = 88/113 (77%)
Frame = +3
Query: 204 MDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNE 383
+ V +L+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC E
Sbjct: 30 LSVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 89
Query: 384 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 542
Q PLVKV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL L
Sbjct: 90 SQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 153 bits (372), Expect = 1e-38
Identities = 69/113 (61%), Positives = 88/113 (77%)
Frame = +3
Query: 204 MDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNE 383
+ V AL+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC E
Sbjct: 27 VSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAE 86
Query: 384 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 542
+ PL+KV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL L
Sbjct: 87 SETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAALQKL 139
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 31.9 bits (69), Expect = 0.075
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +3
Query: 210 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 389
+N + + +K A ++ G+ E KA+ K + L +LA + + LC ++
Sbjct: 37 LNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNN 96
Query: 390 IPLVKVDNNKKLGE 431
+P + + + LGE
Sbjct: 97 VPYLYTVSKELLGE 110
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 31.1 bits (67), Expect = 0.13
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 267 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 428
+GL+ ++ ++A L ++A + D + ALC + +P V N +LG
Sbjct: 134 YGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 28.3 bits (60), Expect = 0.93
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 166 TSTSAMVVDYLTV*NMKQNE*NDARTYYLTNPILNTLKD-FLNYSRFEKIH 17
T + +Y+T + K E DA+ Y++N + +L+D FL S+ + +H
Sbjct: 322 TKYKKVTAEYITFCDKKFKEDEDAKRLYMSNKGIISLRDEFLVLSKLDLMH 372
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 530 RWSFLAEIFDDNTGAADNFPCLAIL 456
RW +LA +F N A N P + +L
Sbjct: 257 RWEYLASLFTSNFTAVHNIPSVPLL 281
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 165 VEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLH 278
+E+ P LS D + + VL L+HGG +HG H
Sbjct: 445 LEIDLEPYLS-ETADKSESHVYVLHGVLVHGGDLHGGH 481
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +1
Query: 37 NNLRNLLVYSKSDL 78
N LRNLLV+SK+DL
Sbjct: 312 NYLRNLLVHSKNDL 325
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 325 WLRTVMKPHTRNLFRLCATNIRFHWSRLTTTKSLE 429
++ +V P L+RLC++ R W ++SL+
Sbjct: 220 FILSVFHPDAARLYRLCSSLKRICWELYDPSRSLD 254
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 498 QHRSSRQFSLPCHPCQSCRD-QPILQAF 418
+ ++ +QF LP PCQ+ + +PI+++F
Sbjct: 226 KRKALKQFPLPPDPCQALANLRPIVKSF 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,967
Number of Sequences: 5004
Number of extensions: 50169
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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