Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b19f
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...   143   1e-34
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    35   0.053
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    29   2.6  
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    29   2.6  
U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    29   3.5  
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    28   4.6  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    28   4.6  
AC024805-6|AAK39340.1|  448|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical pr...    28   6.0  
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe...    27   8.0  
AF022973-11|AAK84524.3|  560|Caenorhabditis elegans Hypothetical...    27   8.0  
AC024863-1|AAF60877.1|  481|Caenorhabditis elegans Prion-like-(q...    27   8.0  

>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score =  143 bits (346), Expect = 1e-34
 Identities = 71/135 (52%), Positives = 89/135 (65%), Gaps = 1/135 (0%)
 Frame = +3

Query: 150 MADVEVEVPTNPI-LSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVL 326
           M+D   +V   P  ++   MD   AL+ VL+ A    GL  GLHE  KALDKR+A  CVL
Sbjct: 1   MSDAGGDVQVAPAAVAQGPMDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVL 60

Query: 327 AENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 506
           AENCDE  Y KLV+ LC EHQIPL+KV + K +GE+ GLCK DK+GKARK+VGCS  V+ 
Sbjct: 61  AENCDEPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVT 120

Query: 507 DFGEETPALDVLKDY 551
           ++G E     +L DY
Sbjct: 121 NWGNEEQGRAILTDY 135


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 34.7 bits (76), Expect = 0.053
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 261 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 428
           L  G+ +  K L + +  +C+LA N         +  +C E +IP V + + ++LG
Sbjct: 69  LREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124


>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
           protein C30G12.6a protein.
          Length = 1100

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 356 LVCGFITVLSQNT*YCLPLVKSFSGFVK 273
           L+C  I ++ Q +  CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845


>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
           protein C30G12.6b protein.
          Length = 1097

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 356 LVCGFITVLSQNT*YCLPLVKSFSGFVK 273
           L+C  I ++ Q +  CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +3

Query: 267 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 428
           HG++   + ++ R+A L ++A + +       + ALC ++ +P   +     LG
Sbjct: 139 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +3

Query: 267 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 428
           HG++   + ++ R+A L ++A + +       + ALC ++ +P   +     LG
Sbjct: 119 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172


>U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical
           protein C10H11.8 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 378 NEHQIPLVKVDNNKKLGEWAGLCK 449
           N++Q+ +  V+NNKK+ +W G  K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 25   SQISNNLRNLLVYSK-SDLLNNMCVHRSIHFVSYFRQSNSQQPWLMLKS 168
            S +SN  + ++ Y     +L N  V + IH V  FR+SN   P++ L +
Sbjct: 1104 SDLSNKTKYVIHYKNLKQVLKNGMVLKKIHRVVSFRESNWLAPYIELNT 1152


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
 Frame = -2

Query: 453 QSCRDQPILQAFCCCQP*PV----ESDVRC--TEPEQVSCMRLHHSSQPKHIVLLASC 298
           QSC   P +Q  C CQ  P     E+   C  T P Q SC       Q  ++V  + C
Sbjct: 27  QSCGCAPKVQPSCSCQQTPYTQPQETSCSCQNTAPVQTSCSCAQPVQQQTYLVPTSQC 84


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +3

Query: 279  EAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGL 443
            E  KALD+ Q ++ VL + CD  A  K ++++  EH     +  N + L E AG+
Sbjct: 3504 EEDKALDQIQVLVDVLKQ-CDIQAVVKSLKSIVEEHCSGEKRRKNLEGLAELAGI 3557


>AC024805-6|AAK39340.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.9 protein.
          Length = 448

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 255 GGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKL 362
           GGLV G+  A KAL     V+ V++E C +A  K L
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETC-QAIVKSL 250


>Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical
           protein T04D3.2 protein.
          Length = 604

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 210 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAY 353
           V VAL +   T LIH   +H L++  K L     V C+L ++  +A Y
Sbjct: 16  VVVALSDRQYTFLIHS-FIHSLYQHTKRLLFSDFVSCLLPKHLQQAMY 62


>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
           protein C06E1.10 protein.
          Length = 1148

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 441 LCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 548
           L K  K+ K +K+     + ++DF EETP  +  +D
Sbjct: 488 LVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFED 523


>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
           spermatogenesis protein15 protein.
          Length = 1219

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +1

Query: 376 ATNIRFHWSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMC 540
           +T+    + RL        G V+AR+T +A  G   A    S  ++ R    W C
Sbjct: 4   STHSTADFGRLVWISDEAEGFVAARITDIAENGFTLATEKTSETVNRRYEDTWAC 58


>AF022973-11|AAK84524.3|  560|Caenorhabditis elegans Hypothetical
           protein F25G6.1 protein.
          Length = 560

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 183 PILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKAL 296
           P+ +G    +     E+L+T +I    +HG  EAAKAL
Sbjct: 122 PVDNGKKKRLTAKECEILRTMVIPHRNIHGAMEAAKAL 159


>AC024863-1|AAF60877.1|  481|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
           isoform a protein.
          Length = 481

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 268 CTRPPW-IKAVFSTSCSATFTSMLLPDKMGLVGTSTSTSAMVVDYLT 131
           C   PW IK   +T C     S+L P + GLVG    T+ +++  LT
Sbjct: 331 CKNCPWGIKD--NTYCQDDHGSVLDPSEAGLVGMGWRTATIILAILT 375


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,974,683
Number of Sequences: 27780
Number of extensions: 296503
Number of successful extensions: 873
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)