Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b12r
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    26   0.33 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   1.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   1.8  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   9.4  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 118 CQIPFFCLNYISGCNVLDLYNRAFV*DSLVITRFGYA 8
           C +PFFC+N ++      +  RAF     V+T  GY+
Sbjct: 284 CWVPFFCVNIVTSYCKTCISGRAF----QVLTWLGYS 316


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 440 NIAQY*NFNQSCILHYFFRIYYYTYFVN 523
           N   Y N+N +   +Y  ++YY  Y +N
Sbjct: 326 NYNNYNNYNNNNYNNYNKKLYYKNYIIN 353


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 34  NYLKQKHDYTNLKHYIQKCNLNKKKESGNTSIIKSI 141
           NY    ++Y N  +Y    N N KK   N + I+ I
Sbjct: 326 NYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQI 361


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 94  LNKKKESGNTSIIKSIANFKTQSFLTKFN 180
           L KK   GN++II  +  FK+ S L  FN
Sbjct: 123 LLKKLYGGNSTIIFLLIRFKSFSLL-NFN 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,682
Number of Sequences: 438
Number of extensions: 4217
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)