Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b12f
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    41   1e-04
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    30   0.27 
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    30   0.27 
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    28   0.82 
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar...    27   1.4  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    27   2.5  
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    27   2.5  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   3.3  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   3.3  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   5.8  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   5.8  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    25   5.8  

>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +1

Query: 196 VKFTVHTKTTLPEFQKSEFIVVRQHEEFVWLHDRYEENEEYAGYIIPPAP 345
           V + + T++ LP F+  +F V R++++F  LH+    + +Y GY IPP P
Sbjct: 21  VSYEIETESDLPVFEDKKFSVRRRYKDFEMLHNIL--SHDYNGYAIPPLP 68


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 31/127 (24%), Positives = 52/127 (40%)
 Frame = +1

Query: 181 SEKEKVKFTVHTKTTLPEFQKSEFIVVRQHEEFVWLHDRYEENEEYAGYIIPPAPPRPDF 360
           S    V + + TKT L  F ++E  V R+  +FV L +      E    ++PP P     
Sbjct: 32  SRDTHVSYLIITKTNLSIFTRAECKVRRRFSDFVKLQEILSRMNE--DCVVPPLP----- 84

Query: 361 DASREKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHEVFLQRLAAHPVFRRD 540
             ++ KL+ +   +G    + F+  + +L + Y+               R A HPV  + 
Sbjct: 85  --AKHKLEYI---KGGRFSDNFINRRAKLLNRYIT--------------RCALHPVLHQS 125

Query: 541 SHLRVFL 561
            H   FL
Sbjct: 126 PHFIAFL 132


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +1

Query: 355 DFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHEVFLQRLAAHPVFR 534
           D+  S   L R  +GE      ++  +   L D     +     + E+ L+ L  HPV R
Sbjct: 72  DYLQSEYNLNRYNDGESIAASRDYQSL---LRDNGSGVYSDEEEITEMMLEELNIHPVLR 128

Query: 535 RDS 543
           R+S
Sbjct: 129 RES 131


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 21/94 (22%), Positives = 41/94 (43%)
 Frame = +1

Query: 25  DCVEDSSQDPLSTVPVADPAPATMDTKVEKKKPNENVSLADNSLLVDISDALSEKEKVKF 204
           D  ED + D    +P A P+ +T       +   E++ L+  S    +S   S       
Sbjct: 253 DIKEDETFDSKVEIPEAAPSSST-------ESDEESIPLSYQSKRRRVSARASSSASSSS 305

Query: 205 TVHTKTTLPEFQKSEFIVVRQHEEFVWLHDRYEE 306
               K+ +P  +++ + ++RQH E   + ++ EE
Sbjct: 306 RTQAKS-IPSHERTHYRLIRQHPELEHVWEKLEE 338


>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +1

Query: 304 ENEEYAGYIIPPAPPRPDFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLA 465
           ++ E   Y +P APP PD    +  LQ +    G+      + +++ +   +L+
Sbjct: 152 DHSEAVEYTVPTAPPIPDLRFQQSYLQSIQRANGSAFLVALITLRDHVLYPFLS 205


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 373 EKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHEVFLQRLAAHP 525
           E++Q+  E  GAL  EE       L  +YL  F K   +HE  +  L   P
Sbjct: 577 EEIQKEAEDSGALMEEELRGKFINLRCKYL--FSKLTTLHEKEIDTLLTIP 625


>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +1

Query: 304 ENEEYAGYIIPPAPPRPDFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTV 483
           E +EY    +  A    +   +REK     E  G ++R+E L+ +EEL       FK   
Sbjct: 79  EFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSG-VSRDELLRQQEELLSRARERFKNQN 137

Query: 484 AMHE 495
             H+
Sbjct: 138 IAHD 141


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 486 DARSIPPAPGCSSCLPQGFSSQGI 557
           D RS+PP PG S+  P+   S  I
Sbjct: 416 DTRSVPPPPGFSTNAPKAVKSPEI 439


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 424 FLKMKEELEDEYLATFKKTVAMHEVFLQRL 513
           FL   EELE++Y   FKK    +  F Q L
Sbjct: 472 FLVTPEELEEQYTDFFKKLKEKYGEFFQNL 501


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 352 PDFDA-SREKLQRLGEGEGALTREEFLKMKEELEDE 456
           P  DA S++K  R+ E      REE +  K+  EDE
Sbjct: 18  PKHDAVSKQKEYRIEEKTNEAQREEIITWKDNREDE 53


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 480 GGDARSIPPAPGCSSCLPQG 539
           GG   +IPP   C SC+  G
Sbjct: 284 GGTGTTIPPNSACRSCMGSG 303


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = +1

Query: 25  DCVEDSSQDPLSTVPVADPAPATMDTKVEKKKPNENVSLADNSLLVD 165
           D  +++S DP          P+T + ++EK++P++   +  +  L D
Sbjct: 157 DLTDETSYDPRKQKFEQGKNPSTTNAEIEKEEPSKKQVVPSSQRLAD 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,241
Number of Sequences: 5004
Number of extensions: 40024
Number of successful extensions: 169
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)