Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14b12f
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104... 56 2e-08
12_01_0611 - 5034481-5034709,5034863-5035020,5035231-5035475,503... 32 0.36
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486... 32 0.36
09_03_0072 + 12073250-12073855 31 0.83
06_02_0116 + 12020693-12020766,12020849-12021137,12021223-120212... 28 4.4
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 28 5.9
02_05_0573 - 30084897-30085529 28 5.9
01_03_0095 + 12482908-12483111,12485906-12486340,12486434-12486835 28 5.9
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589... 28 5.9
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 27 7.7
04_04_0806 - 28186486-28186701,28187047-28187341,28189800-281899... 27 7.7
01_01_0863 - 6724200-6724414,6726300-6726576,6726976-6727145,672... 27 7.7
>01_06_1430 -
37309737-37309946,37310049-37310100,37310348-37310427,
37310538-37310606,37310710-37310843,37311173-37311332,
37311483-37311554,37312113-37312246,37312386-37312521,
37313273-37313416
Length = 396
Score = 56.0 bits (129), Expect = 2e-08
Identities = 36/122 (29%), Positives = 61/122 (50%)
Frame = +1
Query: 196 VKFTVHTKTTLPEFQKSEFIVVRQHEEFVWLHDRYEENEEYAGYIIPPAPPRPDFDASRE 375
+ + V TKT LP+F+ E IV+R++ +F WLHDR E+Y G IPP P + + R
Sbjct: 41 ISYRVITKTNLPDFEGQEKIVIRRYSDFEWLHDRLA--EKYKGIFIPPLPEKNAVEKFR- 97
Query: 376 KLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHEVFLQRLAAHPVFRRDSHLRV 555
+EF++++ + D +F+ R+A+HP ++ L++
Sbjct: 98 ------------FSKEFIELRRQALD--------------LFVNRIASHPELKQSGDLKI 131
Query: 556 FL 561
FL
Sbjct: 132 FL 133
>12_01_0611 -
5034481-5034709,5034863-5035020,5035231-5035475,
5036686-5036983,5037644-5038482,5039763-5039823
Length = 609
Score = 31.9 bits (69), Expect = 0.36
Identities = 19/78 (24%), Positives = 36/78 (46%)
Frame = +1
Query: 292 DRYEENEEYAGYIIPPAPPRPDFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLATF 471
DR + E+ +I +F+A R+KL +L E + ++E+L + ELE E
Sbjct: 530 DRRQRKEKIQNFIDCQVKDVEEFEAERDKLIKLHEEKKVKLKKEYLAKEFELEKELDTAL 589
Query: 472 KKTVAMHEVFLQRLAAHP 525
+ H+ + + + P
Sbjct: 590 TSLMDKHKPDIFKSSTSP 607
>04_01_0097 -
998766-999383,999479-999861,1000021-1000398,
1000486-1000711,1000799-1001323,1003032-1003164,
1004353-1004435,1004645-1005349,1005483-1005556,
1006290-1006392,1006485-1006727
Length = 1156
Score = 31.9 bits (69), Expect = 0.36
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = +1
Query: 70 VADPAPATMDTKVEKKKPNENVSLADNSLLVDISDALSEKEKVKFTVHTKTTLPEFQKSE 249
+A A + K + K+ + LA+N++ I + ++K H TL ++ E
Sbjct: 129 IAALAAENYELKEKLKEVERHAELAENTVDHHIHSPRDLRAELKKLKHAYKTLSSEKEKE 188
Query: 250 FIVVRQHEEFVWLHDRYEENE 312
+R +FVW R EN+
Sbjct: 189 VSALRAENDFVWNQLRTMEND 209
>09_03_0072 + 12073250-12073855
Length = 201
Score = 30.7 bits (66), Expect = 0.83
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 390 GRGG-RSPH*RRVPQDEGGVGRRVPGDL*EDGGDARSIPPAP 512
GRGG P + D GGV +V GD+ E+GG + P P
Sbjct: 142 GRGGVLQPGVQAAAHDAGGVAGQVRGDVHEEGGAGAAQRPPP 183
>06_02_0116 +
12020693-12020766,12020849-12021137,12021223-12021261,
12021367-12021405
Length = 146
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 370 REKLQRLGEGEGALTREEFLKMKEELEDEYLAT 468
REK++ L E EG +T+ +EE+ + Y AT
Sbjct: 111 REKVKTLAEFEGTITKSLPTSFEEEMMNTYYAT 143
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 355 DFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHE 495
+FDA +++L + E + A + E++ ELE+E A + H+
Sbjct: 612 EFDAEQDELIKTHEEKKANVKMEYMAKDVELEEELYAALTSLMEKHK 658
>02_05_0573 - 30084897-30085529
Length = 210
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 5 KVYFKRRTVWKIHRRTLCQLFQWLIQPQLPWTQKSRKRSQ 124
+ F+ + +WK C+ F WL+ + WT R RS+
Sbjct: 68 RTQFQHKPIWKSFAPPQCRYFLWLVALKRCWT-ADRLRSR 106
>01_03_0095 + 12482908-12483111,12485906-12486340,12486434-12486835
Length = 346
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 43 SQDPLSTVPVADPAPATMDTKVEKKKP-NENVSLADNSLLVD 165
++D L+T P+ PAT+D K P + + +DN L V+
Sbjct: 232 TRDTLATTPMDPDTPATLDNNYYKLLPQGKGLFFSDNQLRVN 273
>01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,
5891941-5892073,5892629-5892732,5892867-5895780,
5895876-5895965,5896251-5896355,5896633-5896740,
5896826-5896876
Length = 1334
Score = 27.9 bits (59), Expect = 5.9
Identities = 23/107 (21%), Positives = 46/107 (42%)
Frame = +1
Query: 127 ENVSLADNSLLVDISDALSEKEKVKFTVHTKTTLPEFQKSEFIVVRQHEEFVWLHDRYEE 306
E + L+ V ++D + H LP F + ++ Q+E F+ H+
Sbjct: 1079 EQMDLSGAKSTVSLTDLGDDNGLGTLDSHPAGELPNF---DTLMAHQNEAFI-PHNPVSL 1134
Query: 307 NEEYAGYIIPPAPPRPDFDASREKLQRLGEGEGALTREEFLKMKEEL 447
+ + G + PP P P + ++ + EG G+ +E+ L+ +L
Sbjct: 1135 SPD-EGQLPPPPPLPPMQWRTMRQVASVEEGRGSAAKEDMLESTSDL 1180
>05_05_0195 +
23142830-23143714,23144288-23144314,23144657-23144866,
23144976-23145242,23146290-23146376,23146495-23146553,
23147166-23147768,23148063-23148192,23148570-23149100,
23149636-23149743,23149911-23150456,23150957-23151079,
23151494-23151709
Length = 1263
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 499 FLQRLAAHPVFRRDSHLRVFL 561
+L+RLAAHPV LR FL
Sbjct: 188 YLRRLAAHPVVGHSPDLRTFL 208
>04_04_0806 -
28186486-28186701,28187047-28187341,28189800-28189942,
28190041-28190095,28190181-28190223,28190411-28190486,
28190708-28190826,28190917-28191487
Length = 505
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 388 LGEGEGALTRE-EFLKMKEELEDEYLA 465
+GE EGA++RE E L+ EE E+E ++
Sbjct: 129 IGEEEGAMSREDEMLETSEEKEEEEIS 155
>01_01_0863 -
6724200-6724414,6726300-6726576,6726976-6727145,
6727250-6727526
Length = 312
Score = 27.5 bits (58), Expect = 7.7
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 40 SSQDPLSTVPVADPAPATMDTKVE-KKKPNENVSLADNSLLVDISDALSEKEKVKFTVHT 216
S P V AD A D ++PNE V+ NSLL+D + L EK +HT
Sbjct: 167 SGCSPPVLVTFADAGAAEYDASTGCLREPNE-VATLHNSLLLDAVEELREKHPDVAIMHT 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,605,479
Number of Sequences: 37544
Number of extensions: 303510
Number of successful extensions: 1492
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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