Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b12f
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   2.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   2.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   2.8  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   3.7  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   6.4  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   8.5  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 356 ISMPPARSYSDWARGKEP 409
           IS PP   ++DW    EP
Sbjct: 167 ISSPPLAGWNDWPEELEP 184


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 356 ISMPPARSYSDWARGKEP 409
           IS PP   ++DW    EP
Sbjct: 167 ISSPPLAGWNDWPEELEP 184


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 356 ISMPPARSYSDWARGKEP 409
           IS PP   ++DW    EP
Sbjct: 167 ISSPPLAGWNDWPEELEP 184


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +2

Query: 287 YMTVMKRMKNMLVI*SLQHLLVLISMPPARSYSDWARG 400
           Y  +  RM+  +   +   + + I  PP + YS W  G
Sbjct: 81  YPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGG 118


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 349 EEVLEGLYNQHILHSLHNGHVARQTLHADVLL*TLIFGTPVKL 221
           +++LE +++ H     HNG V R     ++LL +   G  VKL
Sbjct: 16  QQILESVHHCH-----HNGVVHRDLKPENLLLASKAKGAAVKL 53


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 340 LEGLYNQHILHSLHNGH 290
           LE L NQ  LH LH  H
Sbjct: 125 LEQLTNQTGLHGLHGLH 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,163
Number of Sequences: 438
Number of extensions: 3179
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)