Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14b10r
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 31 0.18
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 30 0.42
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 28 1.3
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 28 1.7
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 28 1.7
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 2.2
SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|... 27 3.9
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 27 3.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 3.9
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 26 6.8
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 9.0
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 25 9.0
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 25 9.0
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 31.1 bits (67), Expect = 0.18
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = -2
Query: 302 LFQLNKPQKDLMAFGIWGRLYLRDVTHKQHVTNEDIDDFENILDLIYGKRNEISNEVNAI 123
+FQL+ P + L V +KQ+ TN + F+N Y N N N
Sbjct: 201 VFQLHHPPSPKQTRRVVSEGPLNGVNYKQNTTNNRVSSFQNSQ---YSTLNNFQNNSNQS 257
Query: 122 GNDND 108
N ND
Sbjct: 258 PNSND 262
>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 551
Score = 29.9 bits (64), Expect = 0.42
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -2
Query: 734 LLVPGFQEFTLTDKDVSCTF-RVRLNYGTGE-TFPHFRAVVQDGANIYAHREIGVAACSV 561
L +P FQ++ D F R G E TFP+ Q ++ +E+ V+ CS
Sbjct: 354 LPLPAFQDYLKQDYLYLVNFARAYSLKGYKENTFPNILEAAQSVIHVIEEKELHVSMCSS 413
Query: 560 VACSNNEFKSC 528
S + KSC
Sbjct: 414 YGVSLQDLKSC 424
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 551 SNNEFKSCGRRYKHEKANVEIEDLAIKMTTYSNTHN 444
S NE+K G+R+K E+A E+L+ T+ + N
Sbjct: 1250 SYNEWKKYGKRFKEEQARWRQEELSNLHETHEKSEN 1285
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 556 LVLITSLKAAEEDINMKKRTLKLKI 482
+ T L AA ED++ +KRTL+++I
Sbjct: 1 MATFTPLNAASEDLDKEKRTLEIRI 25
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = -2
Query: 428 DNVVYYPVSFGEKKFPLDTKNYTFTKEKSQDKDYKTGNRWHLLFQLNKPQKDL 270
+NV + PV+ E K L KN +EK + K+ + NR HL + QK+L
Sbjct: 67 ENVQWRPVTAEEWKMDLHRKNERKKREKER-KEVELSNRKHLA-NIRVVQKNL 117
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -2
Query: 338 DKDYKTGNRWHLLFQLNKPQKDLMAFGIWGRLYLRDVTHKQH-VTNEDIDDFENIL 174
D DY T + F+ + +++ G+ G ++RD +++Q + +++ FE+ L
Sbjct: 556 DSDYDTNEQVSTAFEKIRNEEEPKLKGVLGMKFMRDASNRQKALVQDEMQAFEDEL 611
>SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 222
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +1
Query: 664 SLTLNVQLTSLSVSVNSWKPGTSNLLTCETKDGSV 768
+L++++ T +S S+ ++ G C+T+DG+V
Sbjct: 180 TLSISIPYTKMSFSIKNYYNGQPLRYFCKTRDGNV 214
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 455 NTHNTTLQCDNVVYYPVSFGEKKFPLDTKNY 363
N NTTL N + +P+ G+K P+ K++
Sbjct: 317 NLSNTTLNVKNELCFPIPSGKKGAPVFRKHF 347
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = -3
Query: 607 LTSTLIVK*ASPLVR-WLLVLITSLKAAEEDINMKKRTLKLKIWQSR*QHIATLTTQLYN 431
L+ + K S LV WL + +K + I+ K + WQ + ++ L QL++
Sbjct: 244 LSDSEFYKSLSNLVNVWLKTTRSLIKLFHDQIS-KTALEEFNFWQFYYRSLSRLNDQLHS 302
Query: 430 AIMLYITLFLSGKKNFHS 377
+L++ L+ K FH+
Sbjct: 303 RPVLFVLDILAFGKRFHT 320
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 629 RAVVQDGANIYAHREIGVA--ACSVVACSNNEFKSCGRRY 516
+++ D + IY+H ++GVA +A S F+ C +R+
Sbjct: 440 KSIALDDSFIYSHIQLGVAQYKTHAIAESMKTFEDCKKRF 479
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 616 KMALTSTLIVK*ASPLVRWLLVLITSL 536
+ A STL V AS L+ WLL ++TSL
Sbjct: 87 QFAEQSTLRVPMASLLIFWLLKVVTSL 113
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 9.0
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Frame = -2
Query: 680 TFRVRLNYGTGETFPHFRAVVQDGANIYAHREIGVAAC--SVVACSNNEFKS---CGRRY 516
T +V N T P A +DG R +GV+A +V+ N F + GRR+
Sbjct: 71 TPKVIANAEGTRTTPSVVAFTKDG-----ERLVGVSAKRQAVINPENTFFATKRLIGRRF 125
Query: 515 KHEKANVEIEDLAIKMTTYSNTHNTTLQCDNVVYYPVSFG 396
K + +I+++ K+ +SN + L+ Y P G
Sbjct: 126 KEPEVQRDIKEVPYKIVEHSN-GDAWLEARGKTYSPSQIG 164
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 230 VTHKQHVTNEDIDDFENILDLIYGKRNEISNEVN 129
V H + + I DF+++ DL G + SN VN
Sbjct: 455 VNHHSNNSKPAISDFDDVGDLTMGSEIDNSNYVN 488
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,691
Number of Sequences: 5004
Number of extensions: 65676
Number of successful extensions: 206
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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