Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14b10f
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||... 33 0.043
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 30 0.30
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 30 0.30
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|... 26 3.7
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 3.7
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 3.7
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 3.7
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 4.9
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 8.6
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 25 8.6
>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 322
Score = 32.7 bits (71), Expect = 0.043
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 4/158 (2%)
Frame = +1
Query: 115 SLTKTSFQKSTPQDSQ-YVAAAVEYIVSGDVDQNIRNYVRYIEEAAKQNADIIVFPELTL 291
++ S P+D + + V+ + D +N++ + EAAK +++IV PE+
Sbjct: 27 NIMSVSASSLVPKDFRAFRIGLVQLANTKDKSENLQLARLKVLEAAKNGSNVIVLPEIFN 86
Query: 292 TNRSTSFVAPLHGILKQY--PIPALHPNLYDNIMVSISAAARTNQIYVVVNGRELMDCTK 465
+ T G QY PI P+ ++S+ A+ + Y+
Sbjct: 87 SPYGT-------GYFNQYAEPIEESSPSYQ-----ALSSMAKDTKTYLF----------- 123
Query: 466 NDTGEPCPELKE-YIFNTNVVFDRNGAVIDRYRKINLF 576
G PE K+ ++NT +VFD +G +I +RKI+LF
Sbjct: 124 ---GGSIPERKDGKLYNTAMVFDPSGKLIAVHRKIHLF 158
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 29.9 bits (64), Expect = 0.30
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = +1
Query: 334 LKQYPIPALHPNLYDNIMVS---ISAAARTNQIYVVVNGRELMDCTKNDTGEPCPELKEY 504
+ ++ P L+ +L NI +S + N I +V +GR+LM C + +G+ L
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227
Query: 505 IFNTNVVFDRNGAVI 549
+ ++ FD+ A +
Sbjct: 228 L---SLAFDKGPAAV 239
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 29.9 bits (64), Expect = 0.30
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 292 TNRSTSFVAPLHGILKQYP--IPALHPNLYDNIMVSISAAARTNQIYV 429
T +T++++ L G+ P IP++ P +DN ++ + +RT +Y+
Sbjct: 253 TKENTNYLSQLVGLHPAIPPAIPSMFPMSHDNKKSNMESTSRTRNVYI 300
>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
3|||Manual
Length = 700
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 199 DVDQNIRNYVRYIEEAAKQNADIIVFPELTLT 294
D + N + I+EA +QNA + V PEL +T
Sbjct: 18 DFEGNRLRIIDSIKEAKRQNASLRVGPELEVT 49
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 427 VVVNGRELMDCTKNDTG 477
V++NG E + CTKN TG
Sbjct: 224 VLLNGYECVPCTKNGTG 240
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 427 VVVNGRELMDCTKNDTG 477
V++NG E + CTKN TG
Sbjct: 224 VLLNGYECVPCTKNGTG 240
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 26.2 bits (55), Expect = 3.7
Identities = 8/30 (26%), Positives = 19/30 (63%)
Frame = +1
Query: 307 SFVAPLHGILKQYPIPALHPNLYDNIMVSI 396
+F+ P +L+ P+ +HPN+Y +++ +
Sbjct: 645 NFLKPSEALLQHLPL--IHPNIYGEVVIEV 672
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 307 SFVAPLHGILKQYPIPALHPNLYDNIMVSISAAARTNQIYVVVNGRELMD 456
S AP HGI+ + L NL + R+ Q Y + + RE+ D
Sbjct: 524 SNTAPAHGIISIFTSLILFQNLVPISLYITMDIVRSIQSYFIFSDREMYD 573
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 106 LFVSLTKTSFQKSTPQDSQYVAAAVEYIVSGDVDQNIR 219
L +L S ++ P+ + + A IVSGD+ N++
Sbjct: 56 LLFTLANASLKQKDPKSNAHEAFIASKIVSGDLKTNLQ 93
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Frame = -2
Query: 570 IDLAIPINNRSVPIKHNVCIKDILL----QLRTRFAGV 469
+DLA+ N+S+ ++ VC++D ++ Q R RFA +
Sbjct: 366 MDLAVSYVNQSLNVQALVCLEDWIVNSFPQYRNRFAKI 403
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,331
Number of Sequences: 5004
Number of extensions: 45329
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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