Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14b09r
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 64 2e-11
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 52 1e-07
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 29 0.97
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce... 28 1.3
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 27 3.0
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 27 3.9
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 26 5.2
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 26 6.8
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.0
>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 206
Score = 64.5 bits (150), Expect = 2e-11
Identities = 34/106 (32%), Positives = 53/106 (50%)
Frame = -2
Query: 696 FPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFALYLPVLEANW 517
FP E + + K++LL++ +FAP AF + EGK R A +L A++ P L+AN+
Sbjct: 94 FPIEKGAINVVKRVLLDQAVFAPFGTAFFFSWMTLAEGKGFRGAYDKLQAVFWPTLKANY 153
Query: 516 KWLTLFQVINLAFIPPMLRVLFMNIVGFGWAMFLASKRRKQSQRKG 379
FQ +N +P ++ F V W +FL+ K Q G
Sbjct: 154 MVWPFFQTVNFWLMPLQYQMPFACTVAIFWNIFLSLKNASSMQESG 199
>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 221
Score = 51.6 bits (118), Expect = 1e-07
Identities = 30/120 (25%), Positives = 54/120 (45%)
Frame = -2
Query: 765 FGFYGLLFGGTVPHYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFE 586
+ YGL + ++ + + E+ + ++ L++ IFAPL F + E
Sbjct: 95 YAAYGLCLT-PIQFRWFVALSNVIQTENPFIAIVLRVALDQFIFAPLGIVFFFLFMGITE 153
Query: 585 GKTHRAALKQLFALYLPVLEANWKWLTLFQVINLAFIPPMLRVLFMNIVGFGWAMFLASK 406
K++ Y P L+AN+ Q+ N F+P +L+V+F N V W +L+ K
Sbjct: 154 CKSYERLKSYFRKHYWPTLKANYILWPAVQLFNFTFVPLVLQVIFANAVSMVWTAYLSLK 213
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 28.7 bits (61), Expect = 0.97
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = -2
Query: 696 FPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFALYLPVLEANW 517
F + +++ + ++L F + + ++S +F KT L L ++L +NW
Sbjct: 135 FSKPTSAITCSNDVILSLSSFYLIQKDQRIFSDLQFSQKTVDYRLSLLRWIHLSSWPSNW 194
Query: 516 KWLTLF 499
KWL F
Sbjct: 195 KWLAYF 200
>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 753 GLLFGGTVPHYFYETVERLFPEES 682
G FG T PH F+E+ L P+ S
Sbjct: 186 GSFFGATFPHLFFESYPELNPKRS 209
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 27.1 bits (57), Expect = 3.0
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 732 VPHYFYETVERLFPEESASF-PLAKKLLLERLIFAPLMQAFSLYSLARFEGK 580
+P+ +++++ S SF P A K +E + LM S+Y FEGK
Sbjct: 504 IPNELPMVLKQIYYSRSESFKPSAIKEFIEYFLCDQLMNCLSVYYSKYFEGK 555
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 611 ENACINGAKIKRSNNNFFASGNDADSS 691
ENA N + NN+FA G +AD S
Sbjct: 719 ENASNNATDFSTAFNNYFADGPNADHS 745
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 565 SEATFCIVLTSLRSQLEMAYIVPSHKFSIYTSNVESSVHEHCWVWLGNV-LSKQK 404
SEA I+ L Q+ + +V +F S ++S+++E C +G + S+QK
Sbjct: 327 SEANKLIIGNGLDPQVTLGPVVSKTQFEKIVSYIQSAINEGCKCVVGGLPRSEQK 381
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.8 bits (54), Expect = 6.8
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +3
Query: 120 TICSKQPCFVINIQFLMNTSYLFLH 194
TICS ++N F++N ++++H
Sbjct: 100 TICSNSYSILVNYGFILNMVHMYVH 124
>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -2
Query: 372 TLISTLFFMVVDDVLN---LTVIIISQKTFLYQDQLIV 268
T+ +T+ + + V N L ++I+S F+Y QLIV
Sbjct: 51 TIFNTVMLQLANRVKNGLTLAILIVSVVMFVYHQQLIV 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,238
Number of Sequences: 5004
Number of extensions: 65817
Number of successful extensions: 184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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