Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b09r
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0180 - 1431758-1431838,1431975-1432061,1432180-1432230,143...    54   2e-07
02_02_0131 - 7065762-7065813,7065907-7065992,7066080-7066150,706...    50   2e-06
12_01_0180 - 1335825-1335980,1336584-1336670,1336767-1336859,133...    48   6e-06
01_01_0899 - 7085140-7085539,7086777-7086868,7088098-7088187           41   0.001
08_02_1631 + 28381248-28381418,28382069-28382144,28382925-283829...    34   0.14 
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352...    28   9.4  

>11_01_0180 -
           1431758-1431838,1431975-1432061,1432180-1432230,
           1432275-1432367,1432496-1432568,1432657-1432751,
           1433428-1433515,1433647-1433936
          Length = 285

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
 Frame = -2

Query: 765 FGFYGLLFGGTVPHYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFE 586
           F F GL+  G   H +Y  + +L     AS  +A+ LLL++ IF+P+     +  L   E
Sbjct: 143 FTFLGLVLVGPTLHVWYLYLSKLVTINGASGAIAR-LLLDQFIFSPIFIGVFMSLLVTLE 201

Query: 585 GKTHRAA--LKQLFAL--------------YLPVLEANWKWLTLFQVINLAFIPPMLRVL 454
           GK       LKQ+                 +L  + ANW+    FQ +N  F+P   +VL
Sbjct: 202 GKPSLVVPKLKQILCSTADAVAVADMWVREWLSSVIANWQLWIPFQFLNFYFVPQKFQVL 261

Query: 453 FMNIVGFGWAMFLASKRRKQ 394
             N V   W + L+ K  K+
Sbjct: 262 AANFVALAWNVILSFKAHKE 281


>02_02_0131 -
           7065762-7065813,7065907-7065992,7066080-7066150,
           7066563-7066638,7066977-7067078,7068025-7068123,
           7068208-7068339
          Length = 205

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
 Frame = -2

Query: 756 YGLLFGGTVPHYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQ-AFSLYSLARFEGK 580
           +G  +GG   H+ ++ ++ +F  +  +  +AKK+LLE++  +P     F  Y     E +
Sbjct: 79  FGFAYGGPFGHFLHKVLDYIFKGKKDTKTIAKKVLLEQITSSPWNNLLFLFYYGYVVERR 138

Query: 579 THRAALKQLFALYLPVLEANWKWLTLFQVINLAFIPPMLRVLFMNIVGFGWAMFLASKRR 400
             +    ++   Y  V  + W +  +   IN  ++P   RV+F + V   W +FL  + R
Sbjct: 139 PFKEVKTRVKKQYPSVQLSAWMFWPIVGWINHMYMPLQFRVIFHSFVACCWGIFLNLRAR 198

Query: 399 KQSQRK 382
             S ++
Sbjct: 199 AMSLKQ 204


>12_01_0180 -
           1335825-1335980,1336584-1336670,1336767-1336859,
           1336985-1337057,1337153-1337247,1337917-1338004,
           1338135-1338424
          Length = 293

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 33/105 (31%), Positives = 51/105 (48%)
 Frame = -2

Query: 765 FGFYGLLFGGTVPHYFYETVERLFPEESASFPLAKKLLLERLIFAPLMQAFSLYSLARFE 586
           F F GL+  G   H +Y  + +L     AS  +A+ LLL++ IF+P+     +  L   E
Sbjct: 143 FTFLGLVLVGPTLHVWYLYLSKLVMINGASGAIAR-LLLDQFIFSPIFIGVFMSLLVTLE 201

Query: 585 GKTHRAALKQLFALYLPVLEANWKWLTLFQVINLAFIPPMLRVLF 451
           GK      K L   +L  + ANW+    FQ +N  F+P   ++ F
Sbjct: 202 GKPSLVVPK-LKQEWLSSVIANWQLWIPFQFLNFYFVPQKFQLDF 245


>01_01_0899 - 7085140-7085539,7086777-7086868,7088098-7088187
          Length = 193

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
 Frame = -2

Query: 756 YGLLFGGTVPHYFYETVERL----FPEESASFPLAKKLLLERLIFAP--LMQAFSLYSLA 595
           +G  F G V HY+YE ++R     +  ++  F +A K+  + L+F P  L+  FS   LA
Sbjct: 49  FGFAFVGPVGHYWYEYLDRFILRRYQPKTFKF-VASKVAADGLLFGPVDLLLFFSYVGLA 107

Query: 594 RFEGKTHRAALKQLFALYLPVLEANWKWLTLFQVINLAFIPPMLRVLFMNI 442
              G++       +   ++P L          Q+ N  FIP   ++L++N+
Sbjct: 108 --SGRSVEQVKDDVKRDFIPALVLGGTIWPAVQIANFRFIPVRYQLLYVNL 156


>08_02_1631 +
           28381248-28381418,28382069-28382144,28382925-28382995,
           28383375-28383460,28384359-28384423,28384727-28385067
          Length = 269

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -2

Query: 657 LLLERLIFAPLMQA-FSLYSLARFEGKTHRAALKQLFALYLPVLEANWKWLTLFQVINLA 481
           +L+E+L  +P     F +Y     EG+       +L   Y  V    WK+  +   IN  
Sbjct: 58  VLVEQLTASPWNNMMFMMYYGLVVEGRPFSQVKSKLKKDYASVQLTAWKFWPIVSWINYE 117

Query: 480 FIPPMLRVLFMNIVGFGW 427
           ++P  LRVLF + V   W
Sbjct: 118 YMPLQLRVLFHSFVASCW 135


>11_01_0456 +
           3522599-3523921,3524005-3524027,3524097-3525265,
           3525373-3525737
          Length = 959

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 291 LYQDQLIVCSLYPISLY*MKYVFLSELCNMLLNVKISNLYSSRTGC 154
           L+QD ++   ++ +        F++E CN L NV+  NL    T C
Sbjct: 668 LFQDNIVAVKVFSLETRGAHKSFMAE-CNALRNVRHRNLLPILTAC 712


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,481,935
Number of Sequences: 37544
Number of extensions: 350384
Number of successful extensions: 677
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)