Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b09f
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical pr...    46   3e-05
AL023847-8|CAI46616.1|  262|Caenorhabditis elegans Hypothetical ...    29   1.9  
U28992-3|AAA68391.1|  233|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U40798-4|AAA81474.2|  430|Caenorhabditis elegans Hypothetical pr...    28   4.5  

>Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical
           protein T18D3.9 protein.
          Length = 181

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 25/88 (28%), Positives = 43/88 (48%)
 Frame = +2

Query: 341 SFPLAKKLLLERLIFAPLMQAFSLYSLARFEGKTHRAALKQLFALYLPVLEANWKWLTLF 520
           S  L KKL +++L F+P   A  L++L   + ++   +   L   +  +   + K     
Sbjct: 79  SLLLVKKLCIDQLCFSPCFNAAILFNLRLLQHQSAEKSWDLLKEDWFNIYATSLKVWPFV 138

Query: 521 QVINLAFIPPMLRVLFMNIVGFGWAMFL 604
           QV+NL F+P   RV+   +V F W  +L
Sbjct: 139 QVVNLCFVPLNYRVILNQVVAFFWNCYL 166


>AL023847-8|CAI46616.1|  262|Caenorhabditis elegans Hypothetical
           protein Y57A10C.11 protein.
          Length = 262

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +2

Query: 407 SLYSLARFEGKTHRAALKQLFALYLPVLEANWKWLTLFQVINLAFIPPMLRVLFMNIVGF 586
           S +++ RF  K H  +L  LF++ +  L  +   L ++   N     P+L +L+  +VG 
Sbjct: 5   SSFTMGRFTTKLHNVSL--LFSIAISCLAMDLYILPIYN--NKPITIPVLTLLYCCLVGS 60

Query: 587 GW 592
           GW
Sbjct: 61  GW 62


>U28992-3|AAA68391.1|  233|Caenorhabditis elegans Hypothetical
           protein T05C1.3 protein.
          Length = 233

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 452 RLYEFFLQIEPKNIEKMLALMVQRSNV 372
           R+Y +FL +E  ++EK+L   V RS +
Sbjct: 128 RVYIYFLDVEMADVEKLLRFNVDRSTI 154


>U40798-4|AAA81474.2|  430|Caenorhabditis elegans Hypothetical
           protein R13A1.3 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 213 SWLENQSDLILFSHLVFTDYYLVVQFLTISMKQLKGCFLKNL 338
           S++EN   L +F  L F+ Y+L   FL  S+     C + NL
Sbjct: 295 SYIENAVSLGIFCPLSFSFYFLSYAFLQTSLIACSKCSIFNL 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,834,973
Number of Sequences: 27780
Number of extensions: 240488
Number of successful extensions: 615
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)