Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b06r
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    38   0.001
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   6.2  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   6.2  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    25   8.2  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    25   8.2  

>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 20/91 (21%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
 Frame = -1

Query: 419 IAGSFVYCFAPNDKIFFIAPLVEILNGTALLAMRSIFSKMVQPDELGKMNSVVGLTENLM 240
           ++ + +   A +D   F A +++ ++   +  ++SI    VQ +  G++ +   + E + 
Sbjct: 533 LSAAVLLAVAKSDVALFTAVIIQAISNMVVPCVQSIALNGVQSEYNGRVLAAFAVFEAVA 592

Query: 239 PLLYVPLYTKVYTSTMEV-LPGAVFLMGALM 150
            ++  P+Y  VYT +M+V  P  +F + A++
Sbjct: 593 LIIRGPIYAFVYTESMKVSYPNMIFFLSAVI 623


>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 596  SILYLSTRYRFNWDEIKFSIFQTYNFVTHTVGTIFSI 486
            S+++L   Y F  +EIK S+ Q    V +   T F++
Sbjct: 1211 SVVFLLKAYNFGIEEIKDSLLQVRKAVFYEESTSFAL 1247


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 568 DSTGMKSNSVFSRHTTL*RTQLVQFSRYYSLANTSN 461
           DST + S+S+FS  T    T +   S  Y  ++TSN
Sbjct: 482 DSTPVTSSSIFSTATEATDTSVQTSSAIYDSSSTSN 517


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 324 CQKRCSIQYFNQRRNKEYFIVRCKTVDERSRYFTD 428
           C KR    YFN++   + + ++C +  + S YF D
Sbjct: 134 CSKRF---YFNEQSGSDRYSLKCDSDTDSSTYFGD 165


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 377 IFFIAPLVEILNGTALLAMRSIFSKMVQPDELGKMNSVVGL 255
           +FFIA  + IL GT  +     F   +   +LGK ++ V L
Sbjct: 134 VFFIAQCLHILRGTKFIIDWHNFGYSILALKLGKQHTFVKL 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,944
Number of Sequences: 5004
Number of extensions: 64942
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)