Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b06r
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0575 + 9581220-9581622,9581741-9583035                           31   1.2  
01_05_0025 + 17298734-17299669                                         28   6.5  

>03_02_0575 + 9581220-9581622,9581741-9583035
          Length = 565

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/103 (17%), Positives = 48/103 (46%), Gaps = 3/103 (2%)
 Frame = -1

Query: 377 IFFIAPLVEILNGTALLAMRS---IFSKMVQPDELGKMNSVVGLTENLMPLLYVPLYTKV 207
           IFF+   V +    A++ +++   +  +  +   +  +N ++ +   L+ + ++ L   V
Sbjct: 430 IFFVFDSVALFISLAVVVVQTSVVVIERKAKKQMMAVINKLMWVACVLVSVAFLALSFVV 489

Query: 206 YTSTMEVLPGAVFLMGALMTLPAVGAFIWLFVEHRLSLRKTKS 78
                  L   V +MGA + +  +G  ++  + HR+  ++ +S
Sbjct: 490 VGKAERWLAVGVTIMGATILVTTIGTMLYWVIAHRIEAKRMRS 532


>01_05_0025 + 17298734-17299669
          Length = 311

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 431 TISKIAGSFVYCFAPNDKIFFIAPLVEILNGTALLAMRSIFSKMVQ 294
           TI  IA     CF P  ++   +PLV++   T LLA +S   ++++
Sbjct: 223 TIEGIADDVPSCFLPYGQVLK-SPLVDLAVSTGLLASKSAVRRLIK 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,184,775
Number of Sequences: 37544
Number of extensions: 370725
Number of successful extensions: 854
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)