Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b06r
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.9  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   8.9  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   8.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 530 TYNFVTHTVGTIFSILFFSKYL 465
           +YN +TH    +F  LFF + L
Sbjct: 343 SYNMLTHIDARMFKDLFFLQIL 364


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 701 TVGVVFKKAPNNRRVRLCILL 639
           T  + + K  NNRRV L ILL
Sbjct: 289 TQPIKYAKHKNNRRVWLTILL 309


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 597 IYIIFVDPLPIQLG*NQIQYFPDIQLCNAHSWYNFLDI 484
           I ++ VD +P      Q+ Y P +      +W N  DI
Sbjct: 578 IQMVIVDVIPTDKNPVQLWYVPSLDQVWILNWRNQKDI 615


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 336 CSIQYFNQRRNKEYFIVRCKTVDERS 413
           C+IQY      +EY+I+       RS
Sbjct: 108 CNIQYALNPNTEEYYIIEVNARLSRS 133


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 422 KIAGSFVYCFAPNDKIFFIAP 360
           ++A  F  C   NDK  ++AP
Sbjct: 126 EVAWQFGKCIYENDKELYLAP 146


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 422 KIAGSFVYCFAPNDKIFFIAP 360
           ++A  F  C   NDK  ++AP
Sbjct: 100 EVAWQFGKCIYENDKELYLAP 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,243
Number of Sequences: 438
Number of extensions: 4964
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)