Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b06f
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    32   0.054
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   8.3  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    25   8.3  

>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 32.3 bits (70), Expect = 0.054
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 279 KFCVVNIEIRLDMMRNNKLASTVMFLIRWQNLAHTLGCETSLTSWL 142
           KF   +  I LDM+   K    +  L RW ++ H     TS+TSW+
Sbjct: 613 KFAENSHLILLDMVDVGKPDLVLTLLCRWLHMVHLYSSRTSITSWI 658


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 445 TMRDRLISRSMVRQNWTQESVSDNF 519
           T+R  L   SMV +NWT+  +S +F
Sbjct: 680 TLRQHLGQCSMVHKNWTKSFLSLSF 704


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 193 PSNQKHDSGSKFVIPHHVQSYFNVDNAKLKLRKSLPSEL 309
           P+ + H+S +    P H+   FN    +L +R  L  +L
Sbjct: 322 PNTKLHNSRNPDASPRHLPELFNFSPFELSIRPDLNQKL 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,505
Number of Sequences: 5004
Number of extensions: 35770
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)