Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b03f
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    26   5.3  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   5.3  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    25   7.0  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    25   9.2  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   9.2  

>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 7/27 (25%), Positives = 18/27 (66%)
 Frame = -2

Query: 261 EYIIYKGESKINPNLINSLVNQCGNYF 181
           ++++YK   + N +L+ S+  +C N++
Sbjct: 467 DFVLYKNTQEENAHLMLSMEKECANFY 493


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 110 ADQRHNNSMFNILHSSQCIIINLQK*LPHWFTRE 211
           A Q+H  S+  IL  S CI+  LQ  +  +F RE
Sbjct: 542 AKQKHGFSLLKILFISLCILCLLQFIVYSYFHRE 575


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 379 KNPDTINKTIEIAKVIADNMNT 314
           K  + IN   + A V ADNMNT
Sbjct: 343 KTEENINNQFQEASVTADNMNT 364


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 403 SLFCTTDVKNPDTINKTIEIAKVIADNMNTVPEV 302
           SL+   D  + DT   T +I K+I D +N++P+V
Sbjct: 669 SLYDDLDPSSHDT-TITSKIYKIIRDMLNSIPDV 701


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 103  VRTKLTGSCFLVGLNIMKNTVYNECTS 23
            +R   TG+     + IM+N  Y+EC S
Sbjct: 1757 IRNPTTGTICKTDIMIMENVFYDECPS 1783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,718
Number of Sequences: 5004
Number of extensions: 53225
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)