Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b03f
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006678-2|AAK68392.2|  315|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC006678-1|AAU20842.1|  337|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical ...    28   6.5  
U50191-5|AAK31552.1|  247|Caenorhabditis elegans Tetraspanin fam...    27   8.6  

>AC006678-2|AAK68392.2|  315|Caenorhabditis elegans Hypothetical
           protein R05G9.2a protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = +3

Query: 150 IVLSALSLIYRSNCHIGLPENLSNSDLFWIHLYRLYIQEGCDQSIYAEDLTTSGTVFILS 329
           ++L+A  L       IGL       + FW+ +   +      Q      +TT G +F+  
Sbjct: 194 LILAAFGLFILWAILIGLCLYYQVINDFWLSILHAFTGSLTVQIPSPAQITTCGILFLNF 253

Query: 330 AITLAISIVLLIV 368
           A T+++S+++LI+
Sbjct: 254 AATISVSLLILIL 266


>AC006678-1|AAU20842.1|  337|Caenorhabditis elegans Hypothetical
           protein R05G9.2b protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = +3

Query: 150 IVLSALSLIYRSNCHIGLPENLSNSDLFWIHLYRLYIQEGCDQSIYAEDLTTSGTVFILS 329
           ++L+A  L       IGL       + FW+ +   +      Q      +TT G +F+  
Sbjct: 216 LILAAFGLFILWAILIGLCLYYQVINDFWLSILHAFTGSLTVQIPSPAQITTCGILFLNF 275

Query: 330 AITLAISIVLLIV 368
           A T+++S+++LI+
Sbjct: 276 AATISVSLLILIL 288


>AF067618-1|AAC19199.2| 1174|Caenorhabditis elegans Hypothetical
            protein F56H1.3 protein.
          Length = 1174

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
 Frame = +3

Query: 138  SISYIVLSALSLI-YRSNCHIGLPENLSNSDLFWIHLYRLYIQEGCDQSIYAEDLTTSGT 314
            S++ ++   L  + YR++  +G    +S +  F     R+  Q         +      +
Sbjct: 807  SVNILIAINLDFVQYRNHLKLGKSAIISLTTYFDTIFGRIKAQPAQPALTIIQTTAVPES 866

Query: 315  VFILSAITLAISIVLLIVSGFLTSVVQNNERIQYVNLAVY 434
              +L A+    +IVLL++S  +     +N R +Y N+ +Y
Sbjct: 867  NLLLIALISVSAIVLLVISCLIGYGFTSNGRAKYTNIYLY 906


>U50191-5|AAK31552.1|  247|Caenorhabditis elegans Tetraspanin family
           protein 10 protein.
          Length = 247

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/54 (22%), Positives = 29/54 (53%)
 Frame = +3

Query: 216 SNSDLFWIHLYRLYIQEGCDQSIYAEDLTTSGTVFILSAITLAISIVLLIVSGF 377
           +N+DL  +H Y  +  +GC+++I  +  + +  +   S   L + I+   ++G+
Sbjct: 181 TNNDLQALHCYPQHFNDGCEKTIRNKISSNAQYLGAASMGVLVVEIIASFLAGY 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,487,108
Number of Sequences: 27780
Number of extensions: 292890
Number of successful extensions: 681
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)