Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14b02f
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    55   4e-08
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    52   3e-07
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    36   0.031
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    34   0.096
Z81546-9|CAD45596.2|  782|Caenorhabditis elegans Hypothetical pr...    31   0.89 
AY313179-1|AAP79304.1|  782|Caenorhabditis elegans myotubularin-...    31   0.89 
AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical ...    29   3.6  
AC006695-9|AAF39977.1|  453|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like ...    28   4.8  
U42832-2|AAA83572.1|  558|Caenorhabditis elegans Udp-glucuronosy...    28   6.3  
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 46/143 (32%), Positives = 66/143 (46%), Gaps = 7/143 (4%)
 Frame = +3

Query: 132 RNARIVGGSQAAQGSHPHMVAMTNGIFIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLS 311
           R AR+VGG +   G+ P   A+ N    ++  CG S+L    ++TAAHC    F      
Sbjct: 23  RIARVVGGFETVPGAFPWTAALRNKA-TKAHHCGASILDKTHLITAAHC----FEEDERV 77

Query: 312 GNLRLTVG---TNQWNSGGSLHTVSRNITHPHYVSNTIKNDLGIL-ITSSNIVFNNRVRP 479
            +  + VG    NQ +    +  + R   +P Y  +   +D+ IL I    I FN   +P
Sbjct: 78  SSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLY-KDIFSHDIAILEIPYPGIEFNEYAQP 136

Query: 480 ISL---SFDYVPGGVPVRVAGWG 539
           I L    F Y PG   V V+GWG
Sbjct: 137 ICLPSKDFVYTPGRQCV-VSGWG 158


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 3/168 (1%)
 Frame = +3

Query: 120 EHVDRNARIVGGSQAAQGSHPHMVAMTNGIFIRSFVCGGSVLTARSVLTAAHCIVAVFTL 299
           ++V  + R++GGS+++  S P  V + + +      CGGS++    VLTAAHC    F  
Sbjct: 50  DYVTLDHRLIGGSESSPHSWPWTVQLLSRLGHHR--CGGSLIDPNFVLTAAHC----FAK 103

Query: 300 GSLSGNLRLTVGTNQWNSGGSLHTVSRNITHPHY-VSNTIKNDLGILITSSNIVFNNRVR 476
                +  + VG ++ +  GS H V+    HP Y +      D  I+     +  +   R
Sbjct: 104 DRRPTSYSVRVGGHR-SGSGSPHRVTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTAR 162

Query: 477 PISL-SFDYVPGGVPVRVAGWGRVRANGALST-NLLEINVRTIDGQTC 614
           PI L S   V   + V V GWG      +LS   L EI+V  +    C
Sbjct: 163 PICLPSLPAVENRLCV-VTGWGSTIEGSSLSAPTLREIHVPLLSTLFC 209


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = +3

Query: 225 VCGGSVLTARSVLTAAHCIVAVFTLGSLSGNLRLTVG--TNQW---NSGGSLHTVSRN 383
           +CGG+++T + VLTAAHC    F      G      G     W   NS GSL    RN
Sbjct: 61  ICGGTLITLKHVLTAAHCFQKHFGAKKEGGEENSMSGRYCESWVIYNSEGSLEIYFRN 118


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 28/119 (23%), Positives = 52/119 (43%)
 Frame = +3

Query: 141 RIVGGSQAAQGSHPHMVAMTNGIFIRSFVCGGSVLTARSVLTAAHCIVAVFTLGSLSGNL 320
           RI+GG+    G++     ++ G   +  +CG +V+    ++TAAHC + + T        
Sbjct: 37  RIIGGNSIDDGANWMAKLVSYGDNGQGILCGATVIDDFWLVTAAHCALQLQTRS------ 90

Query: 321 RLTVGTNQWNSGGSLHTVSRNITHPHYVSNTIKNDLGILITSSNIVFNNRVRPISLSFD 497
                    N+     +V     H  Y + T  ND+ +L  SS++     ++P+ L  D
Sbjct: 91  -FVYVREPKNNRERSFSVKEAYIHSGYNNQTADNDIALLRISSDL-SKLGIKPVCLVHD 147


>Z81546-9|CAD45596.2|  782|Caenorhabditis elegans Hypothetical
           protein F53A2.8b protein.
          Length = 782

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 58  WRSLRLPGPSPSLKMTCPSSTSMWTGTLVLWG 153
           W ++ L G  PS+  + PSS+S W+   V  G
Sbjct: 16  WNNMSLSGIYPSISTSTPSSSSSWSSHFVFGG 47


>AY313179-1|AAP79304.1|  782|Caenorhabditis elegans
           myotubularin-related protein MTM-6B protein.
          Length = 782

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 58  WRSLRLPGPSPSLKMTCPSSTSMWTGTLVLWG 153
           W ++ L G  PS+  + PSS+S W+   V  G
Sbjct: 16  WNNMSLSGIYPSISTSTPSSSSSWSSHFVFGG 47


>AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical
           protein C54G6.2 protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = -2

Query: 153 PPQYERSGPHARRRWTCHLQAWGGPRQPQRAPQKVFRILCSFLPSPESDY 4
           P  Y  +  H RRR +     +  PRQP+ +     R+   +    E DY
Sbjct: 73  PNPYNTAPTHYRRRSSTEAHRYHPPRQPRSSAPTHHRVPADYPSDEEDDY 122


>AC006695-9|AAF39977.1|  453|Caenorhabditis elegans Hypothetical
           protein W06H8.2 protein.
          Length = 453

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -3

Query: 230 ADKAPDEDTISHCYHMGVAALSCLATPHNTSVPVHMLVEDGHVIFRLGEGPGSRKERHKK 51
           A+  P ++ I+     G      + T +    PVH+      +IF+ GE P +R+E +KK
Sbjct: 50  ANGVPTQEIINVYDKWGNGQFGVILTGNVQVSPVHLEAPGNAMIFKEGETP-ARREAYKK 108

Query: 50  YS 45
           ++
Sbjct: 109 WA 110


>AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like
           protease protein 7 protein.
          Length = 522

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 102 DMSIFYEHVDRNARIVGGSQAAQGSHPHMVA--MTNGIFIRSFVCGGSVLTARSVLTAAH 275
           +M +++  +  +A++  G  A+Q   P  V   + +     +  C G++++ R +L A H
Sbjct: 149 EMILYWLRIPFSAKVYNGRDASQSEAPWSVFTYLYSKDEQSATTCTGTIVSPRHILIATH 208

Query: 276 C 278
           C
Sbjct: 209 C 209


>U42832-2|AAA83572.1|  558|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein57 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 331 TVRRRFPERLPSVNTATMQ*AAVSTERAVSTEPPQTKLLMKIPL 200
           T+++RF +  P+VNT   Q AA         EPP+   L  IP+
Sbjct: 243 TIKKRF-KNFPNVNTLKQQSAAYFVNTDPLLEPPRALPLNVIPV 285


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 225 VCGGSVLTARSVLTAAHCI 281
           VCGG ++    V+T+AHC+
Sbjct: 45  VCGGVLIAPSIVITSAHCV 63


>U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical
           protein D1044.2c protein.
          Length = 1090

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 329 CQTKISRETSKCEYSNNAMSSGEHRACGE 243
           CQT+  +  +K + ++NA+S  ++  CGE
Sbjct: 360 CQTRQEKCATKTQCASNALSFNDYDRCGE 388


>U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical
           protein D1044.2a protein.
          Length = 1051

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 329 CQTKISRETSKCEYSNNAMSSGEHRACGE 243
           CQT+  +  +K + ++NA+S  ++  CGE
Sbjct: 360 CQTRQEKCATKTQCASNALSFNDYDRCGE 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,173,466
Number of Sequences: 27780
Number of extensions: 328767
Number of successful extensions: 1091
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)