Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14a13r
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    37   0.003
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    31   0.14 
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    27   2.3  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    27   3.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.1  

>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 679 CYRCGRGGHWSKECPKALGPDRNG 608
           CYRCG+ GHW + CP    P+ +G
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDG 208


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
 Frame = -3

Query: 715 VRQRPGMGDPEQ---CYRCGRGGHWSKEC 638
           VR  P   +P Q   CY+CGR GH +++C
Sbjct: 70  VRDCPSSPNPRQGAECYKCGRVGHIARDC 98



 Score = 30.7 bits (66), Expect = 0.25
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -3

Query: 691 DPEQ---CYRCGRGGHWSKECPKALGPDRNGFRDRAFGR 584
           +P+Q   CY CG  GH  ++CP +  P R G      GR
Sbjct: 53  EPQQEKTCYACGTAGHLVRDCPSSPNP-RQGAECYKCGR 90



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 682 QCYRCGRGGHWSKECPK 632
           +CY CG  GH ++EC K
Sbjct: 18  RCYNCGENGHQARECTK 34



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 682 QCYRCGRGGHWSKECPKA 629
           +CY CG+ GH S EC +A
Sbjct: 136 KCYSCGKIGHRSFECQQA 153


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 704 PLPDTTRRQLHLHG-LSVDHHTVQLFD 781
           PLPD T R+LHL+  L    H++ L D
Sbjct: 633 PLPDETTRRLHLNNLLKYQKHSLSLED 659


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 679 CYRCGRGGHWSKECPKAL 626
           C+ C   GH SK+CP  L
Sbjct: 89  CHNCKGNGHISKDCPHVL 106


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 625  PAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAPSWAVRRPS 762
            P P+ TP    P+  SG+ +   P PA +    S  APS A   P+
Sbjct: 1044 PIPTSTPPV--PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPA 1087


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,447
Number of Sequences: 5004
Number of extensions: 55365
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)