Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14a12f
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    30   0.20 
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    28   0.82 
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    27   1.4  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   2.5  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   5.8  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   5.8  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   7.6  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    25   7.6  
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|...    25   7.6  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   7.6  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
 Frame = +1

Query: 232 QADADGDGKVTQDEWLALWDEYAKDPAAAKDWQNLLCKSIFQIQDSSNDGSVDVNEYVTV 411
           + DADG+G +   E+L +     KD    ++      +  F++ D   +G + V E   V
Sbjct: 56  EVDADGNGTIDFTEFLTMMARKMKDTDNEEE-----VREAFKVFDKDGNGYITVEELTHV 110

Query: 412 HESFG--LNKDESTEAFKKL-AKGKDSISWADFQEL 510
             S G  L+++E  +  ++    G   I++ +F  +
Sbjct: 111 LTSLGERLSQEEVADMIREADTDGDGVINYEEFSRV 146


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = +1

Query: 382 SVDVNEYVTVHESFGLNKD--ESTEAFKKLAKGKDSI-----SWADFQELWKEYFSSDDP 540
           SVD+++Y+  H    L+KD  + T++F  +  G+ S        + + E+      +DDP
Sbjct: 26  SVDISDYIVSHSDDSLSKDIKKDTKSFLDVEHGEISTVDEFEEDSPYPEVRAAVPPTDDP 85

Query: 541 DVPGNYI 561
            +P N I
Sbjct: 86  SMPCNTI 92


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 428 SIRTKAPRPLKNWLKVKTQSLGQISRNCGRSISAATTRMYPV 553
           S R +  R  +  LKV   S+G++       IS A +R+ PV
Sbjct: 78  SARKRRNRKARENLKVNVSSIGEVLPEIDLDISVANSRLKPV 119


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 436 DESTEAFKKLAKGKDSISWADFQELWKEY 522
           +E+++   KL K KD+      +ELW+E+
Sbjct: 172 EEASQISNKLEKEKDATGSKSIEELWEEH 200


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 403 VTVHESFGLNKDESTEAFKKLAKGKDSISWADFQELWKEYFSSD 534
           V + E+F  N + + E  K+L K     SW      W     SD
Sbjct: 432 VDLDENFDFNVNVTNEDAKQLKKSVIGSSWTTVNNDWNSVSKSD 475


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 172 SPTYDILQESMIAIWLGLQKQADADGDGKVTQDEWLAL 285
           S +  +L+E  +   L L    D+ GDG VT+DE +++
Sbjct: 712 STSVPVLEELQLRNKLFLTLLEDSIGDGDVTEDEKISI 749


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 135 GSQFKVLFFYDSTLIGVKEYGEDMEQFLFSDF 40
           G     LFF+D   I   EYG+ + +  F  F
Sbjct: 149 GESLPPLFFHDDECISTIEYGKQITRDRFDPF 180


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 20/85 (23%), Positives = 35/85 (41%)
 Frame = +1

Query: 229 KQADADGDGKVTQDEWLALWDEYAKDPAAAKDWQNLLCKSIFQIQDSSNDGSVDVNEYVT 408
           K   + G+G +     + L D   K+   A+   +    S   + D  N GSV +     
Sbjct: 255 KNMKSPGEGDLDSASQIELHDFKKKESLTAEFTTS--SPSTASLSDKKNPGSVHIRPNNE 312

Query: 409 VHESFGLNKDESTEAFKKLAKGKDS 483
           V  S   ++  ST + +   +GK+S
Sbjct: 313 VAPSSAPSRAPSTTSVESNTEGKES 337


>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 158 PLSLAMFWAASSKSCFSTTPLLSESKNT 75
           PLS A+    S  SC+S T +L  S+N+
Sbjct: 9   PLSRAITRGISQFSCYSNTLVLRSSRNS 36


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -1

Query: 267 LSNFSVSISVGLFLQSQPDGDHAFLQDVVGGASRGPPSEFGDV---LGSQFKVLFFYDST 97
           LS+ S S +      +QP      L+++V   S G PS+F D     G+ +  L  +  T
Sbjct: 79  LSDISPSFTSSANSINQPYNYSGSLENLVPTPSAGTPSQFMDAQNPYGAVYNALSQFSET 138

Query: 96  LIGVKEYGEDME 61
              +  Y +D E
Sbjct: 139 EPKMPSYMDDEE 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,649
Number of Sequences: 5004
Number of extensions: 55552
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)